Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6761 | 5' | -55 | NC_001875.2 | + | 49535 | 0.68 | 0.784934 |
Target: 5'- -aGUAgaaUUGCGCgccGCGCCAGGgcGUCg -3' miRNA: 3'- cgCGUg--AACGCGa--CGCGGUCUauCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 49866 | 0.69 | 0.755949 |
Target: 5'- gGCGCGcCUUGC-CgGCGCCAaccaaGUGGUCg -3' miRNA: 3'- -CGCGU-GAACGcGaCGCGGUc----UAUCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 58502 | 0.69 | 0.76574 |
Target: 5'- cCGCGC-UGCGUuucgaaauUGCGCCGGAccuguGUCg -3' miRNA: 3'- cGCGUGaACGCG--------ACGCGGUCUau---CAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 62426 | 0.77 | 0.329947 |
Target: 5'- -aGCGUUUGCGCUGCGCCGGcugcaaGGUCg -3' miRNA: 3'- cgCGUGAACGCGACGCGGUCua----UCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 62880 | 0.66 | 0.89915 |
Target: 5'- uGUGCAaaUGCGUgGCGCCGGAa---- -3' miRNA: 3'- -CGCGUgaACGCGaCGCGGUCUaucag -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 63698 | 0.66 | 0.878201 |
Target: 5'- cGCGCACgaggUGCGCgugauugccuCGCCGGAacUGGa- -3' miRNA: 3'- -CGCGUGa---ACGCGac--------GCGGUCU--AUCag -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 64827 | 0.69 | 0.736031 |
Target: 5'- gGCuGCGCUUGCGCUugaGCCcGAUuguGUCg -3' miRNA: 3'- -CG-CGUGAACGCGAcg-CGGuCUAu--CAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 65555 | 0.66 | 0.892407 |
Target: 5'- cGCGCAUUUGaCGCagagcgcGUGCCAGAagagcuuGUCc -3' miRNA: 3'- -CGCGUGAAC-GCGa------CGCGGUCUau-----CAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 65801 | 0.66 | 0.885422 |
Target: 5'- gGCGCGCggugccUGCGCgGCGCCAa------ -3' miRNA: 3'- -CGCGUGa-----ACGCGaCGCGGUcuaucag -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 68826 | 0.7 | 0.705462 |
Target: 5'- cGCuGUAUUUGCGCUGCcuGgCGGAcgGGUCg -3' miRNA: 3'- -CG-CGUGAACGCGACG--CgGUCUa-UCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 72724 | 0.66 | 0.905647 |
Target: 5'- uUGCGCUUGCGCgucgGCCAGcgAcgccGUCa -3' miRNA: 3'- cGCGUGAACGCGacg-CGGUCuaU----CAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 74301 | 0.68 | 0.794318 |
Target: 5'- aGCGCAUcgccuacgGCGCgcagGCGCCGGAcAG-Ca -3' miRNA: 3'- -CGCGUGaa------CGCGa---CGCGGUCUaUCaG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 80634 | 0.69 | 0.76574 |
Target: 5'- cGCGCGCUcgacGgGCgGCGCCAGAaccgcgccGUCg -3' miRNA: 3'- -CGCGUGAa---CgCGaCGCGGUCUau------CAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 81009 | 0.67 | 0.847053 |
Target: 5'- gGCGCGCgacGCGUUGCuGCCGGucuacaAGUa -3' miRNA: 3'- -CGCGUGaa-CGCGACG-CGGUCua----UCAg -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 81347 | 0.71 | 0.642813 |
Target: 5'- gGCGCGCUggugccGCGCgcacGCGCCGGccgcGUCg -3' miRNA: 3'- -CGCGUGAa-----CGCGa---CGCGGUCuau-CAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 83326 | 0.67 | 0.855167 |
Target: 5'- gGCGCGCgccGgGCggcGCGCCAaaAUAGUCc -3' miRNA: 3'- -CGCGUGaa-CgCGa--CGCGGUc-UAUCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 91143 | 0.66 | 0.885422 |
Target: 5'- cGCGCGCgcgGCGguuccaaaUGCGCCGcgucAUGGUCc -3' miRNA: 3'- -CGCGUGaa-CGCg-------ACGCGGUc---UAUCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 93463 | 0.7 | 0.725923 |
Target: 5'- cGCGCACUU-UGUcaGCGCCGGGUGG-Ca -3' miRNA: 3'- -CGCGUGAAcGCGa-CGCGGUCUAUCaG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 94618 | 0.69 | 0.774444 |
Target: 5'- aGCGCggcagcgGCUUGCugcaccGCUGCGCCAGGc---- -3' miRNA: 3'- -CGCG-------UGAACG------CGACGCGGUCUaucag -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 96200 | 1.11 | 0.001897 |
Target: 5'- cGCGCACUUGCGCUGCGCCAGAUAGUCc -3' miRNA: 3'- -CGCGUGAACGCGACGCGGUCUAUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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