miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6761 5' -55 NC_001875.2 + 3063 0.66 0.905647
Target:  5'- gGCGCGCa-GCgGC-GCGCCGG--GGUCg -3'
miRNA:   3'- -CGCGUGaaCG-CGaCGCGGUCuaUCAG- -5'
6761 5' -55 NC_001875.2 + 5004 0.7 0.725923
Target:  5'- uGCgGCACUUGUGCacuuUGCGCCGccucGGUCu -3'
miRNA:   3'- -CG-CGUGAACGCG----ACGCGGUcua-UCAG- -5'
6761 5' -55 NC_001875.2 + 5794 0.73 0.518223
Target:  5'- -gGCAUUUGCcgGCUGCGCauaAGGUAGUa -3'
miRNA:   3'- cgCGUGAACG--CGACGCGg--UCUAUCAg -5'
6761 5' -55 NC_001875.2 + 7244 0.66 0.878201
Target:  5'- aUGCACUUuccGCGCUGCagcgGCCuGGcgcgGGUCg -3'
miRNA:   3'- cGCGUGAA---CGCGACG----CGGuCUa---UCAG- -5'
6761 5' -55 NC_001875.2 + 12420 0.67 0.855167
Target:  5'- cGCGCGCcaagcaggccgUUGCGUgcGCGCCGcGGUGGa- -3'
miRNA:   3'- -CGCGUG-----------AACGCGa-CGCGGU-CUAUCag -5'
6761 5' -55 NC_001875.2 + 12673 0.66 0.905647
Target:  5'- cGCGCGCc-GCGUUG-GCCGGGUGu-- -3'
miRNA:   3'- -CGCGUGaaCGCGACgCGGUCUAUcag -5'
6761 5' -55 NC_001875.2 + 12791 0.75 0.422204
Target:  5'- cGCGCACaUGCGCa-CGCCGGAccAGUCu -3'
miRNA:   3'- -CGCGUGaACGCGacGCGGUCUa-UCAG- -5'
6761 5' -55 NC_001875.2 + 14796 0.67 0.855167
Target:  5'- aUGCAUcacgaUUGCcaGgaGCGCCAGcAUGGUCa -3'
miRNA:   3'- cGCGUG-----AACG--CgaCGCGGUC-UAUCAG- -5'
6761 5' -55 NC_001875.2 + 16890 0.66 0.892407
Target:  5'- uGCGUACgcGCaGCgGCGCCGcGAU-GUCg -3'
miRNA:   3'- -CGCGUGaaCG-CGaCGCGGU-CUAuCAG- -5'
6761 5' -55 NC_001875.2 + 16937 0.67 0.838733
Target:  5'- aGCGCAUcgGCGCguUGCGCCAcGUGa-- -3'
miRNA:   3'- -CGCGUGaaCGCG--ACGCGGUcUAUcag -5'
6761 5' -55 NC_001875.2 + 18278 0.67 0.855167
Target:  5'- gGCGCGCcgUGCGCgaccGCGCCGuuGAUuGGg- -3'
miRNA:   3'- -CGCGUGa-ACGCGa---CGCGGU--CUA-UCag -5'
6761 5' -55 NC_001875.2 + 32124 0.75 0.404301
Target:  5'- cGCGCACUUGCGa-GCGCCGcAUAG-Cg -3'
miRNA:   3'- -CGCGUGAACGCgaCGCGGUcUAUCaG- -5'
6761 5' -55 NC_001875.2 + 32984 0.67 0.863067
Target:  5'- cGCGCACg-GUGUUGCGCUcgc-GGUCg -3'
miRNA:   3'- -CGCGUGaaCGCGACGCGGucuaUCAG- -5'
6761 5' -55 NC_001875.2 + 33037 0.69 0.76574
Target:  5'- aGCGCgGCggGCGCcGCGCCgcgcGGAUAG-Cg -3'
miRNA:   3'- -CGCG-UGaaCGCGaCGCGG----UCUAUCaG- -5'
6761 5' -55 NC_001875.2 + 37112 0.66 0.885422
Target:  5'- uGCGgGCgcgGCGCcGCGCCGGcguuUGcGUCu -3'
miRNA:   3'- -CGCgUGaa-CGCGaCGCGGUCu---AU-CAG- -5'
6761 5' -55 NC_001875.2 + 38648 0.67 0.870747
Target:  5'- cGCGUAUUgcGCGCUG-GCCGGAcAGg- -3'
miRNA:   3'- -CGCGUGAa-CGCGACgCGGUCUaUCag -5'
6761 5' -55 NC_001875.2 + 41469 0.74 0.448988
Target:  5'- gGCGCGCgcgGCGUgucuuguguggucUGCGCCGGccGGUCg -3'
miRNA:   3'- -CGCGUGaa-CGCG-------------ACGCGGUCuaUCAG- -5'
6761 5' -55 NC_001875.2 + 41814 0.67 0.838733
Target:  5'- cGCGCGCcgGCGCcGCGgCCAGuugcgcGUCc -3'
miRNA:   3'- -CGCGUGaaCGCGaCGC-GGUCuau---CAG- -5'
6761 5' -55 NC_001875.2 + 44456 0.66 0.892407
Target:  5'- gGCGC-CgucgGCGCagUGCGCCA---AGUCg -3'
miRNA:   3'- -CGCGuGaa--CGCG--ACGCGGUcuaUCAG- -5'
6761 5' -55 NC_001875.2 + 45144 0.69 0.755949
Target:  5'- gGCGcCACUUGcCGCUacugGCCAGGUAcGUCu -3'
miRNA:   3'- -CGC-GUGAAC-GCGAcg--CGGUCUAU-CAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.