miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6761 5' -55 NC_001875.2 + 96200 1.11 0.001897
Target:  5'- cGCGCACUUGCGCUGCGCCAGAUAGUCc -3'
miRNA:   3'- -CGCGUGAACGCGACGCGGUCUAUCAG- -5'
6761 5' -55 NC_001875.2 + 62426 0.77 0.329947
Target:  5'- -aGCGUUUGCGCUGCGCCGGcugcaaGGUCg -3'
miRNA:   3'- cgCGUGAACGCGACGCGGUCua----UCAG- -5'
6761 5' -55 NC_001875.2 + 32124 0.75 0.404301
Target:  5'- cGCGCACUUGCGa-GCGCCGcAUAG-Cg -3'
miRNA:   3'- -CGCGUGAACGCgaCGCGGUcUAUCaG- -5'
6761 5' -55 NC_001875.2 + 12791 0.75 0.422204
Target:  5'- cGCGCACaUGCGCa-CGCCGGAccAGUCu -3'
miRNA:   3'- -CGCGUGaACGCGacGCGGUCUa-UCAG- -5'
6761 5' -55 NC_001875.2 + 41469 0.74 0.448988
Target:  5'- gGCGCGCgcgGCGUgucuuguguggucUGCGCCGGccGGUCg -3'
miRNA:   3'- -CGCGUGaa-CGCG-------------ACGCGGUCuaUCAG- -5'
6761 5' -55 NC_001875.2 + 5794 0.73 0.518223
Target:  5'- -gGCAUUUGCcgGCUGCGCauaAGGUAGUa -3'
miRNA:   3'- cgCGUGAACG--CGACGCGg--UCUAUCAg -5'
6761 5' -55 NC_001875.2 + 102761 0.73 0.535447
Target:  5'- uUGCACgaGCGCUGCagcgcuucaaaacuGCCGGaAUGGUCu -3'
miRNA:   3'- cGCGUGaaCGCGACG--------------CGGUC-UAUCAG- -5'
6761 5' -55 NC_001875.2 + 81347 0.71 0.642813
Target:  5'- gGCGCGCUggugccGCGCgcacGCGCCGGccgcGUCg -3'
miRNA:   3'- -CGCGUGAa-----CGCGa---CGCGGUCuau-CAG- -5'
6761 5' -55 NC_001875.2 + 68826 0.7 0.705462
Target:  5'- cGCuGUAUUUGCGCUGCcuGgCGGAcgGGUCg -3'
miRNA:   3'- -CG-CGUGAACGCGACG--CgGUCUa-UCAG- -5'
6761 5' -55 NC_001875.2 + 107844 0.7 0.705462
Target:  5'- uGCGC-CUUGCGacgcGCGCgAGuUGGUCg -3'
miRNA:   3'- -CGCGuGAACGCga--CGCGgUCuAUCAG- -5'
6761 5' -55 NC_001875.2 + 99391 0.7 0.705462
Target:  5'- cCGCACcgGCG--GCGCCAGcgGGUCg -3'
miRNA:   3'- cGCGUGaaCGCgaCGCGGUCuaUCAG- -5'
6761 5' -55 NC_001875.2 + 5004 0.7 0.725923
Target:  5'- uGCgGCACUUGUGCacuuUGCGCCGccucGGUCu -3'
miRNA:   3'- -CG-CGUGAACGCG----ACGCGGUcua-UCAG- -5'
6761 5' -55 NC_001875.2 + 93463 0.7 0.725923
Target:  5'- cGCGCACUU-UGUcaGCGCCGGGUGG-Ca -3'
miRNA:   3'- -CGCGUGAAcGCGa-CGCGGUCUAUCaG- -5'
6761 5' -55 NC_001875.2 + 64827 0.69 0.736031
Target:  5'- gGCuGCGCUUGCGCUugaGCCcGAUuguGUCg -3'
miRNA:   3'- -CG-CGUGAACGCGAcg-CGGuCUAu--CAG- -5'
6761 5' -55 NC_001875.2 + 49866 0.69 0.755949
Target:  5'- gGCGCGcCUUGC-CgGCGCCAaccaaGUGGUCg -3'
miRNA:   3'- -CGCGU-GAACGcGaCGCGGUc----UAUCAG- -5'
6761 5' -55 NC_001875.2 + 45144 0.69 0.755949
Target:  5'- gGCGcCACUUGcCGCUacugGCCAGGUAcGUCu -3'
miRNA:   3'- -CGC-GUGAAC-GCGAcg--CGGUCUAU-CAG- -5'
6761 5' -55 NC_001875.2 + 33037 0.69 0.76574
Target:  5'- aGCGCgGCggGCGCcGCGCCgcgcGGAUAG-Cg -3'
miRNA:   3'- -CGCG-UGaaCGCGaCGCGG----UCUAUCaG- -5'
6761 5' -55 NC_001875.2 + 80634 0.69 0.76574
Target:  5'- cGCGCGCUcgacGgGCgGCGCCAGAaccgcgccGUCg -3'
miRNA:   3'- -CGCGUGAa---CgCGaCGCGGUCUau------CAG- -5'
6761 5' -55 NC_001875.2 + 58502 0.69 0.76574
Target:  5'- cCGCGC-UGCGUuucgaaauUGCGCCGGAccuguGUCg -3'
miRNA:   3'- cGCGUGaACGCG--------ACGCGGUCUau---CAG- -5'
6761 5' -55 NC_001875.2 + 94618 0.69 0.774444
Target:  5'- aGCGCggcagcgGCUUGCugcaccGCUGCGCCAGGc---- -3'
miRNA:   3'- -CGCG-------UGAACG------CGACGCGGUCUaucag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.