Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6761 | 5' | -55 | NC_001875.2 | + | 14796 | 0.67 | 0.855167 |
Target: 5'- aUGCAUcacgaUUGCcaGgaGCGCCAGcAUGGUCa -3' miRNA: 3'- cGCGUG-----AACG--CgaCGCGGUC-UAUCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 80634 | 0.69 | 0.76574 |
Target: 5'- cGCGCGCUcgacGgGCgGCGCCAGAaccgcgccGUCg -3' miRNA: 3'- -CGCGUGAa---CgCGaCGCGGUCUau------CAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 98813 | 0.69 | 0.775404 |
Target: 5'- gGCGCcCgccGCGCUGCGCUuaAGggGGUUc -3' miRNA: 3'- -CGCGuGaa-CGCGACGCGG--UCuaUCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 74301 | 0.68 | 0.794318 |
Target: 5'- aGCGCAUcgccuacgGCGCgcagGCGCCGGAcAG-Ca -3' miRNA: 3'- -CGCGUGaa------CGCGa---CGCGGUCUaUCaG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 119061 | 0.68 | 0.794318 |
Target: 5'- uGCGCAUgUGCGCgGCGCCccGGcUGGa- -3' miRNA: 3'- -CGCGUGaACGCGaCGCGG--UCuAUCag -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 129036 | 0.68 | 0.794318 |
Target: 5'- cCGCGCUcGCGCU-CGCCAGAc---- -3' miRNA: 3'- cGCGUGAaCGCGAcGCGGUCUaucag -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 16937 | 0.67 | 0.838733 |
Target: 5'- aGCGCAUcgGCGCguUGCGCCAcGUGa-- -3' miRNA: 3'- -CGCGUGaaCGCG--ACGCGGUcUAUcag -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 41814 | 0.67 | 0.838733 |
Target: 5'- cGCGCGCcgGCGCcGCGgCCAGuugcgcGUCc -3' miRNA: 3'- -CGCGUGaaCGCGaCGC-GGUCuau---CAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 113573 | 0.67 | 0.845405 |
Target: 5'- cGCGCACggcGCGCcauUGgGCCAGcacggcguucgAGUCg -3' miRNA: 3'- -CGCGUGaa-CGCG---ACgCGGUCua---------UCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 58502 | 0.69 | 0.76574 |
Target: 5'- cCGCGC-UGCGUuucgaaauUGCGCCGGAccuguGUCg -3' miRNA: 3'- cGCGUGaACGCG--------ACGCGGUCUau---CAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 49866 | 0.69 | 0.755949 |
Target: 5'- gGCGCGcCUUGC-CgGCGCCAaccaaGUGGUCg -3' miRNA: 3'- -CGCGU-GAACGcGaCGCGGUc----UAUCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 45144 | 0.69 | 0.755949 |
Target: 5'- gGCGcCACUUGcCGCUacugGCCAGGUAcGUCu -3' miRNA: 3'- -CGC-GUGAAC-GCGAcg--CGGUCUAU-CAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 32124 | 0.75 | 0.404301 |
Target: 5'- cGCGCACUUGCGa-GCGCCGcAUAG-Cg -3' miRNA: 3'- -CGCGUGAACGCgaCGCGGUcUAUCaG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 5794 | 0.73 | 0.518223 |
Target: 5'- -gGCAUUUGCcgGCUGCGCauaAGGUAGUa -3' miRNA: 3'- cgCGUGAACG--CGACGCGg--UCUAUCAg -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 102761 | 0.73 | 0.535447 |
Target: 5'- uUGCACgaGCGCUGCagcgcuucaaaacuGCCGGaAUGGUCu -3' miRNA: 3'- cGCGUGaaCGCGACG--------------CGGUC-UAUCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 81347 | 0.71 | 0.642813 |
Target: 5'- gGCGCGCUggugccGCGCgcacGCGCCGGccgcGUCg -3' miRNA: 3'- -CGCGUGAa-----CGCGa---CGCGGUCuau-CAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 68826 | 0.7 | 0.705462 |
Target: 5'- cGCuGUAUUUGCGCUGCcuGgCGGAcgGGUCg -3' miRNA: 3'- -CG-CGUGAACGCGACG--CgGUCUa-UCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 107844 | 0.7 | 0.705462 |
Target: 5'- uGCGC-CUUGCGacgcGCGCgAGuUGGUCg -3' miRNA: 3'- -CGCGuGAACGCga--CGCGgUCuAUCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 99391 | 0.7 | 0.705462 |
Target: 5'- cCGCACcgGCG--GCGCCAGcgGGUCg -3' miRNA: 3'- cGCGUGaaCGCgaCGCGGUCuaUCAG- -5' |
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6761 | 5' | -55 | NC_001875.2 | + | 64827 | 0.69 | 0.736031 |
Target: 5'- gGCuGCGCUUGCGCUugaGCCcGAUuguGUCg -3' miRNA: 3'- -CG-CGUGAACGCGAcg-CGGuCUAu--CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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