miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6761 5' -55 NC_001875.2 + 96200 1.11 0.001897
Target:  5'- cGCGCACUUGCGCUGCGCCAGAUAGUCc -3'
miRNA:   3'- -CGCGUGAACGCGACGCGGUCUAUCAG- -5'
6761 5' -55 NC_001875.2 + 91143 0.66 0.885422
Target:  5'- cGCGCGCgcgGCGguuccaaaUGCGCCGcgucAUGGUCc -3'
miRNA:   3'- -CGCGUGaa-CGCg-------ACGCGGUc---UAUCAG- -5'
6761 5' -55 NC_001875.2 + 65555 0.66 0.892407
Target:  5'- cGCGCAUUUGaCGCagagcgcGUGCCAGAagagcuuGUCc -3'
miRNA:   3'- -CGCGUGAAC-GCGa------CGCGGUCUau-----CAG- -5'
6761 5' -55 NC_001875.2 + 111191 0.66 0.905647
Target:  5'- gGCGCGCUgggcgGCGC-GCGCCGuuUuuuGUUg -3'
miRNA:   3'- -CGCGUGAa----CGCGaCGCGGUcuAu--CAG- -5'
6761 5' -55 NC_001875.2 + 93463 0.7 0.725923
Target:  5'- cGCGCACUU-UGUcaGCGCCGGGUGG-Ca -3'
miRNA:   3'- -CGCGUGAAcGCGa-CGCGGUCUAUCaG- -5'
6761 5' -55 NC_001875.2 + 33037 0.69 0.76574
Target:  5'- aGCGCgGCggGCGCcGCGCCgcgcGGAUAG-Cg -3'
miRNA:   3'- -CGCG-UGaaCGCGaCGCGG----UCUAUCaG- -5'
6761 5' -55 NC_001875.2 + 49535 0.68 0.784934
Target:  5'- -aGUAgaaUUGCGCgccGCGCCAGGgcGUCg -3'
miRNA:   3'- cgCGUg--AACGCGa--CGCGGUCUauCAG- -5'
6761 5' -55 NC_001875.2 + 128016 0.68 0.830214
Target:  5'- cCGCGCcgGCG-UGCGCCGacgacggccGGUGGUCg -3'
miRNA:   3'- cGCGUGaaCGCgACGCGGU---------CUAUCAG- -5'
6761 5' -55 NC_001875.2 + 83326 0.67 0.855167
Target:  5'- gGCGCGCgccGgGCggcGCGCCAaaAUAGUCc -3'
miRNA:   3'- -CGCGUGaa-CgCGa--CGCGGUc-UAUCAG- -5'
6761 5' -55 NC_001875.2 + 96605 0.66 0.885422
Target:  5'- cGCGCGCUuuuUGUGCacaaucGCGgCCAGGUcGGUUu -3'
miRNA:   3'- -CGCGUGA---ACGCGa-----CGC-GGUCUA-UCAG- -5'
6761 5' -55 NC_001875.2 + 38648 0.67 0.870747
Target:  5'- cGCGUAUUgcGCGCUG-GCCGGAcAGg- -3'
miRNA:   3'- -CGCGUGAa-CGCGACgCGGUCUaUCag -5'
6761 5' -55 NC_001875.2 + 18278 0.67 0.855167
Target:  5'- gGCGCGCcgUGCGCgaccGCGCCGuuGAUuGGg- -3'
miRNA:   3'- -CGCGUGa-ACGCGa---CGCGGU--CUA-UCag -5'
6761 5' -55 NC_001875.2 + 12791 0.75 0.422204
Target:  5'- cGCGCACaUGCGCa-CGCCGGAccAGUCu -3'
miRNA:   3'- -CGCGUGaACGCGacGCGGUCUa-UCAG- -5'
6761 5' -55 NC_001875.2 + 63698 0.66 0.878201
Target:  5'- cGCGCACgaggUGCGCgugauugccuCGCCGGAacUGGa- -3'
miRNA:   3'- -CGCGUGa---ACGCGac--------GCGGUCU--AUCag -5'
6761 5' -55 NC_001875.2 + 41469 0.74 0.448988
Target:  5'- gGCGCGCgcgGCGUgucuuguguggucUGCGCCGGccGGUCg -3'
miRNA:   3'- -CGCGUGaa-CGCG-------------ACGCGGUCuaUCAG- -5'
6761 5' -55 NC_001875.2 + 81009 0.67 0.847053
Target:  5'- gGCGCGCgacGCGUUGCuGCCGGucuacaAGUa -3'
miRNA:   3'- -CGCGUGaa-CGCGACG-CGGUCua----UCAg -5'
6761 5' -55 NC_001875.2 + 65801 0.66 0.885422
Target:  5'- gGCGCGCggugccUGCGCgGCGCCAa------ -3'
miRNA:   3'- -CGCGUGa-----ACGCGaCGCGGUcuaucag -5'
6761 5' -55 NC_001875.2 + 16890 0.66 0.892407
Target:  5'- uGCGUACgcGCaGCgGCGCCGcGAU-GUCg -3'
miRNA:   3'- -CGCGUGaaCG-CGaCGCGGU-CUAuCAG- -5'
6761 5' -55 NC_001875.2 + 5004 0.7 0.725923
Target:  5'- uGCgGCACUUGUGCacuuUGCGCCGccucGGUCu -3'
miRNA:   3'- -CG-CGUGAACGCG----ACGCGGUcua-UCAG- -5'
6761 5' -55 NC_001875.2 + 94618 0.69 0.774444
Target:  5'- aGCGCggcagcgGCUUGCugcaccGCUGCGCCAGGc---- -3'
miRNA:   3'- -CGCG-------UGAACG------CGACGCGGUCUaucag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.