miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6761 5' -55 NC_001875.2 + 129036 0.68 0.794318
Target:  5'- cCGCGCUcGCGCU-CGCCAGAc---- -3'
miRNA:   3'- cGCGUGAaCGCGAcGCGGUCUaucag -5'
6761 5' -55 NC_001875.2 + 128016 0.68 0.830214
Target:  5'- cCGCGCcgGCG-UGCGCCGacgacggccGGUGGUCg -3'
miRNA:   3'- cGCGUGaaCGCgACGCGGU---------CUAUCAG- -5'
6761 5' -55 NC_001875.2 + 121747 0.66 0.905647
Target:  5'- uUGCACUUGUGCUGUaGaCCAcGUcGUCg -3'
miRNA:   3'- cGCGUGAACGCGACG-C-GGUcUAuCAG- -5'
6761 5' -55 NC_001875.2 + 121400 0.66 0.905009
Target:  5'- cGCGcCGCgucaaaGCuGCUGCGCCaaauguuGGGUAGUg -3'
miRNA:   3'- -CGC-GUGaa----CG-CGACGCGG-------UCUAUCAg -5'
6761 5' -55 NC_001875.2 + 119061 0.68 0.794318
Target:  5'- uGCGCAUgUGCGCgGCGCCccGGcUGGa- -3'
miRNA:   3'- -CGCGUGaACGCGaCGCGG--UCuAUCag -5'
6761 5' -55 NC_001875.2 + 114022 0.66 0.905647
Target:  5'- cGCGCAUggcggccGCGCgGU-CCAGAUGGUa -3'
miRNA:   3'- -CGCGUGaa-----CGCGaCGcGGUCUAUCAg -5'
6761 5' -55 NC_001875.2 + 113573 0.67 0.845405
Target:  5'- cGCGCACggcGCGCcauUGgGCCAGcacggcguucgAGUCg -3'
miRNA:   3'- -CGCGUGaa-CGCG---ACgCGGUCua---------UCAG- -5'
6761 5' -55 NC_001875.2 + 111191 0.66 0.905647
Target:  5'- gGCGCGCUgggcgGCGC-GCGCCGuuUuuuGUUg -3'
miRNA:   3'- -CGCGUGAa----CGCGaCGCGGUcuAu--CAG- -5'
6761 5' -55 NC_001875.2 + 110072 0.66 0.89915
Target:  5'- cGCGCGCagaGaCGCUGCGCguGGaGGcCg -3'
miRNA:   3'- -CGCGUGaa-C-GCGACGCGguCUaUCaG- -5'
6761 5' -55 NC_001875.2 + 107844 0.7 0.705462
Target:  5'- uGCGC-CUUGCGacgcGCGCgAGuUGGUCg -3'
miRNA:   3'- -CGCGuGAACGCga--CGCGgUCuAUCAG- -5'
6761 5' -55 NC_001875.2 + 102761 0.73 0.535447
Target:  5'- uUGCACgaGCGCUGCagcgcuucaaaacuGCCGGaAUGGUCu -3'
miRNA:   3'- cGCGUGaaCGCGACG--------------CGGUC-UAUCAG- -5'
6761 5' -55 NC_001875.2 + 99391 0.7 0.705462
Target:  5'- cCGCACcgGCG--GCGCCAGcgGGUCg -3'
miRNA:   3'- cGCGUGaaCGCgaCGCGGUCuaUCAG- -5'
6761 5' -55 NC_001875.2 + 98813 0.69 0.775404
Target:  5'- gGCGCcCgccGCGCUGCGCUuaAGggGGUUc -3'
miRNA:   3'- -CGCGuGaa-CGCGACGCGG--UCuaUCAG- -5'
6761 5' -55 NC_001875.2 + 98035 0.66 0.89915
Target:  5'- cGCGCGCcgUGCGCcgacgggcaagUGCGCCuAGAc---- -3'
miRNA:   3'- -CGCGUGa-ACGCG-----------ACGCGG-UCUaucag -5'
6761 5' -55 NC_001875.2 + 96989 0.67 0.863067
Target:  5'- uGCGCAagUUGCGUUGCGaCGGGUGu-- -3'
miRNA:   3'- -CGCGUg-AACGCGACGCgGUCUAUcag -5'
6761 5' -55 NC_001875.2 + 96605 0.66 0.885422
Target:  5'- cGCGCGCUuuuUGUGCacaaucGCGgCCAGGUcGGUUu -3'
miRNA:   3'- -CGCGUGA---ACGCGa-----CGC-GGUCUA-UCAG- -5'
6761 5' -55 NC_001875.2 + 96371 0.66 0.89915
Target:  5'- gGCGCACaUGCGCUGCagguCCuGcgcGUCa -3'
miRNA:   3'- -CGCGUGaACGCGACGc---GGuCuauCAG- -5'
6761 5' -55 NC_001875.2 + 96200 1.11 0.001897
Target:  5'- cGCGCACUUGCGCUGCGCCAGAUAGUCc -3'
miRNA:   3'- -CGCGUGAACGCGACGCGGUCUAUCAG- -5'
6761 5' -55 NC_001875.2 + 94618 0.69 0.774444
Target:  5'- aGCGCggcagcgGCUUGCugcaccGCUGCGCCAGGc---- -3'
miRNA:   3'- -CGCG-------UGAACG------CGACGCGGUCUaucag -5'
6761 5' -55 NC_001875.2 + 93463 0.7 0.725923
Target:  5'- cGCGCACUU-UGUcaGCGCCGGGUGG-Ca -3'
miRNA:   3'- -CGCGUGAAcGCGa-CGCGGUCUAUCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.