miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 3' -60.5 NC_001875.2 + 29286 0.67 0.604337
Target:  5'- -gGCGGGGcGCGGuCGUGUGGCGuGUcgUGCg -3'
miRNA:   3'- caCGUUCC-CGCU-GCGCGUCGC-CG--ACG- -5'
6762 3' -60.5 NC_001875.2 + 37042 0.67 0.604337
Target:  5'- cGUGCAcGGcGCGugcacGCGCGCGgacGCGGCcacGCu -3'
miRNA:   3'- -CACGUuCC-CGC-----UGCGCGU---CGCCGa--CG- -5'
6762 3' -60.5 NC_001875.2 + 37881 0.67 0.604337
Target:  5'- -gGC--GGGCcGCGC-CAGCGGCUuGCu -3'
miRNA:   3'- caCGuuCCCGcUGCGcGUCGCCGA-CG- -5'
6762 3' -60.5 NC_001875.2 + 92033 0.67 0.598283
Target:  5'- uUGCgAAGGGCcacgccgcggaagacGACGUuuuGCAGCGG-UGCa -3'
miRNA:   3'- cACG-UUCCCG---------------CUGCG---CGUCGCCgACG- -5'
6762 3' -60.5 NC_001875.2 + 112050 0.67 0.594251
Target:  5'- --aCAAGGGCGAguuugaacuaaUGCauuGGCGGCUGCc -3'
miRNA:   3'- cacGUUCCCGCU-----------GCGcg-UCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 41451 0.67 0.594251
Target:  5'- -cGCAcAGGcgccgguuGCGGCGCGC-GCGGCgUGUc -3'
miRNA:   3'- caCGU-UCC--------CGCUGCGCGuCGCCG-ACG- -5'
6762 3' -60.5 NC_001875.2 + 114489 0.67 0.594251
Target:  5'- uGUGCGgcAGcacucugacGCGGuCGCGCGGCGGC-GCa -3'
miRNA:   3'- -CACGU--UCc--------CGCU-GCGCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 99913 0.67 0.594251
Target:  5'- -cGCAAcgagcGGGCcGCGCGC-GCGGUgcaGCg -3'
miRNA:   3'- caCGUU-----CCCGcUGCGCGuCGCCGa--CG- -5'
6762 3' -60.5 NC_001875.2 + 24010 0.67 0.594251
Target:  5'- -cGCAAGGcGCaccgGGCGCGggcuCGGCGGUcGCg -3'
miRNA:   3'- caCGUUCC-CG----CUGCGC----GUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 89899 0.67 0.594251
Target:  5'- cGUGUAcGuGGCGcCGCGCauauaaagGGCGGC-GCg -3'
miRNA:   3'- -CACGUuC-CCGCuGCGCG--------UCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 30925 0.67 0.584193
Target:  5'- -aGCGAGcgcGGCGagcgucuccGCGCGCuGCGGC-GCc -3'
miRNA:   3'- caCGUUC---CCGC---------UGCGCGuCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 97518 0.67 0.584193
Target:  5'- cGUGCGuuucgucuucGGGGUgGGCGCGUuuGGUGGCcaugGCu -3'
miRNA:   3'- -CACGU----------UCCCG-CUGCGCG--UCGCCGa---CG- -5'
6762 3' -60.5 NC_001875.2 + 109118 0.67 0.584193
Target:  5'- -gGUAuaGGcGGCGACG-GCGGCGGUcuugGCg -3'
miRNA:   3'- caCGU--UC-CCGCUGCgCGUCGCCGa---CG- -5'
6762 3' -60.5 NC_001875.2 + 97002 0.67 0.584193
Target:  5'- uUGCGAcGGGUGugGgCGacaaaaCGGCGGCaGCg -3'
miRNA:   3'- cACGUU-CCCGCugC-GC------GUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 3159 0.67 0.584193
Target:  5'- -gGCGucGGGCGGCGaguaggugaGcCGGCGGCcGCg -3'
miRNA:   3'- caCGUu-CCCGCUGCg--------C-GUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 113539 0.67 0.584193
Target:  5'- -gGCGgcGGGGCcaauaaGCGCGCgaAGCGGCcuugUGCg -3'
miRNA:   3'- caCGU--UCCCGc-----UGCGCG--UCGCCG----ACG- -5'
6762 3' -60.5 NC_001875.2 + 19118 0.67 0.583188
Target:  5'- uGUGCGc--GCGACGCGCcuaccacGGCGGC-GCc -3'
miRNA:   3'- -CACGUuccCGCUGCGCG-------UCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 124721 0.67 0.581181
Target:  5'- -gGCAAGcGGCG-CGUggcggucaaugucgGCAGCGcgcGCUGCa -3'
miRNA:   3'- caCGUUC-CCGCuGCG--------------CGUCGC---CGACG- -5'
6762 3' -60.5 NC_001875.2 + 124999 0.67 0.574168
Target:  5'- cGUGCAAGuuGGCGuCGgGCAcguugucgacGCGGC-GCa -3'
miRNA:   3'- -CACGUUC--CCGCuGCgCGU----------CGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 77934 0.67 0.568172
Target:  5'- -cGCAAcGGCGcgcccacaauuauuuGCGcCGCGGCGGC-GCg -3'
miRNA:   3'- caCGUUcCCGC---------------UGC-GCGUCGCCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.