miRNA display CGI


Results 21 - 40 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 3' -60.5 NC_001875.2 + 62415 0.66 0.644809
Target:  5'- uUGCGuGGGCaagcguuuGCGCuGCGcCGGCUGCa -3'
miRNA:   3'- cACGUuCCCGc-------UGCG-CGUcGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 37582 0.66 0.644809
Target:  5'- aUGCGccGGCGcgaGCGcCGCGGCcGGCcGCa -3'
miRNA:   3'- cACGUucCCGC---UGC-GCGUCG-CCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 105889 0.66 0.644809
Target:  5'- gGUGCAGuacccgauGGCGG-GCGCGGCGGCc-- -3'
miRNA:   3'- -CACGUUc-------CCGCUgCGCGUCGCCGacg -5'
6762 3' -60.5 NC_001875.2 + 94690 0.66 0.634687
Target:  5'- gGUGCuGGaacccGGCGAUGCGCAcGCGGaaagacGCa -3'
miRNA:   3'- -CACGuUC-----CCGCUGCGCGU-CGCCga----CG- -5'
6762 3' -60.5 NC_001875.2 + 111193 0.66 0.634687
Target:  5'- -cGCGcuGGGCGGCGCGCGcCGuuuuuuGUUGCu -3'
miRNA:   3'- caCGUu-CCCGCUGCGCGUcGC------CGACG- -5'
6762 3' -60.5 NC_001875.2 + 44540 0.66 0.634687
Target:  5'- -aGCA---GCGuCGCGCGGCgugccgGGCUGCa -3'
miRNA:   3'- caCGUuccCGCuGCGCGUCG------CCGACG- -5'
6762 3' -60.5 NC_001875.2 + 119769 0.66 0.634687
Target:  5'- gGUGCGucugacGGGCGACGUGUAcGCuGUUGa -3'
miRNA:   3'- -CACGUu-----CCCGCUGCGCGU-CGcCGACg -5'
6762 3' -60.5 NC_001875.2 + 84437 0.66 0.634687
Target:  5'- -gGCGgaucGGGaGCGGCG-GCGGCGGUagaccaugaUGCg -3'
miRNA:   3'- caCGU----UCC-CGCUGCgCGUCGCCG---------ACG- -5'
6762 3' -60.5 NC_001875.2 + 38300 0.66 0.634687
Target:  5'- -cGCGGuGGCGA-GCGCcgacaaggccGGCGGCaUGCa -3'
miRNA:   3'- caCGUUcCCGCUgCGCG----------UCGCCG-ACG- -5'
6762 3' -60.5 NC_001875.2 + 91057 0.66 0.634687
Target:  5'- gGUGCu-GGGC-ACGCGCagcacgccguuuAGCGaCUGCa -3'
miRNA:   3'- -CACGuuCCCGcUGCGCG------------UCGCcGACG- -5'
6762 3' -60.5 NC_001875.2 + 72342 0.66 0.633674
Target:  5'- -gGCAcauGGGGCacucGACGCGCuugucucGGCcGcGCUGCg -3'
miRNA:   3'- caCGU---UCCCG----CUGCGCG-------UCG-C-CGACG- -5'
6762 3' -60.5 NC_001875.2 + 33039 0.66 0.624562
Target:  5'- -cGCGGcGGGCGcCGCGCcgcGCGGauaGCg -3'
miRNA:   3'- caCGUU-CCCGCuGCGCGu--CGCCga-CG- -5'
6762 3' -60.5 NC_001875.2 + 29403 0.66 0.624562
Target:  5'- -gGCAAGGGCGccaacccgGCGCucgGCAaCGGCgaGCg -3'
miRNA:   3'- caCGUUCCCGC--------UGCG---CGUcGCCGa-CG- -5'
6762 3' -60.5 NC_001875.2 + 73719 0.66 0.624562
Target:  5'- cUGUuGGGGUuggucgggagGugGCuGCGGCGGUUGUu -3'
miRNA:   3'- cACGuUCCCG----------CugCG-CGUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 107957 0.66 0.624562
Target:  5'- cGUGCAcgaauucGGCGACaccaGCAaCGGCUGCa -3'
miRNA:   3'- -CACGUuc-----CCGCUGcg--CGUcGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 40285 0.66 0.624562
Target:  5'- -cGUAcGuGGCGGCGgGCAaCGgGCUGCa -3'
miRNA:   3'- caCGUuC-CCGCUGCgCGUcGC-CGACG- -5'
6762 3' -60.5 NC_001875.2 + 86138 0.67 0.614443
Target:  5'- -gGCAGuGcGCGGCGCGC-GCGGCg-- -3'
miRNA:   3'- caCGUUcC-CGCUGCGCGuCGCCGacg -5'
6762 3' -60.5 NC_001875.2 + 57314 0.67 0.614443
Target:  5'- -cGCGucgucGGCGACGCaauuguugcgGCAGC-GCUGCg -3'
miRNA:   3'- caCGUuc---CCGCUGCG----------CGUCGcCGACG- -5'
6762 3' -60.5 NC_001875.2 + 107840 0.67 0.604337
Target:  5'- cUGCAuugucgcGGGCGAgGC-CAGCGGCcGg -3'
miRNA:   3'- cACGUu------CCCGCUgCGcGUCGCCGaCg -5'
6762 3' -60.5 NC_001875.2 + 29286 0.67 0.604337
Target:  5'- -gGCGGGGcGCGGuCGUGUGGCGuGUcgUGCg -3'
miRNA:   3'- caCGUUCC-CGCU-GCGCGUCGC-CG--ACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.