miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 3' -60.5 NC_001875.2 + 72342 0.66 0.633674
Target:  5'- -gGCAcauGGGGCacucGACGCGCuugucucGGCcGcGCUGCg -3'
miRNA:   3'- caCGU---UCCCG----CUGCGCG-------UCG-C-CGACG- -5'
6762 3' -60.5 NC_001875.2 + 44540 0.66 0.634687
Target:  5'- -aGCA---GCGuCGCGCGGCgugccgGGCUGCa -3'
miRNA:   3'- caCGUuccCGCuGCGCGUCG------CCGACG- -5'
6762 3' -60.5 NC_001875.2 + 107957 0.66 0.624562
Target:  5'- cGUGCAcgaauucGGCGACaccaGCAaCGGCUGCa -3'
miRNA:   3'- -CACGUuc-----CCGCUGcg--CGUcGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 21961 0.66 0.675087
Target:  5'- -cGCGGggauGGGCGGCGC-CAGCGccaGCUugGCa -3'
miRNA:   3'- caCGUU----CCCGCUGCGcGUCGC---CGA--CG- -5'
6762 3' -60.5 NC_001875.2 + 91057 0.66 0.634687
Target:  5'- gGUGCu-GGGC-ACGCGCagcacgccguuuAGCGaCUGCa -3'
miRNA:   3'- -CACGuuCCCGcUGCGCG------------UCGCcGACG- -5'
6762 3' -60.5 NC_001875.2 + 3334 0.66 0.672069
Target:  5'- -aGCGGgacGGGCGccucguguccggucACGCGCAugagauaacgcGCGGCUGa -3'
miRNA:   3'- caCGUU---CCCGC--------------UGCGCGU-----------CGCCGACg -5'
6762 3' -60.5 NC_001875.2 + 52200 0.66 0.669049
Target:  5'- uUGCu-GGGCGACuGCGCGccgugcaaacuggacGCGcGaCUGCg -3'
miRNA:   3'- cACGuuCCCGCUG-CGCGU---------------CGC-C-GACG- -5'
6762 3' -60.5 NC_001875.2 + 33039 0.66 0.624562
Target:  5'- -cGCGGcGGGCGcCGCGCcgcGCGGauaGCg -3'
miRNA:   3'- caCGUU-CCCGCuGCGCGu--CGCCga-CG- -5'
6762 3' -60.5 NC_001875.2 + 83809 0.66 0.675087
Target:  5'- cGUGCcuguGGGCGGCG-GCcacGUGGCcGCc -3'
miRNA:   3'- -CACGuu--CCCGCUGCgCGu--CGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 111193 0.66 0.634687
Target:  5'- -cGCGcuGGGCGGCGCGCGcCGuuuuuuGUUGCu -3'
miRNA:   3'- caCGUu-CCCGCUGCGCGUcGC------CGACG- -5'
6762 3' -60.5 NC_001875.2 + 40285 0.66 0.624562
Target:  5'- -cGUAcGuGGCGGCGgGCAaCGgGCUGCa -3'
miRNA:   3'- caCGUuC-CCGCUGCgCGUcGC-CGACG- -5'
6762 3' -60.5 NC_001875.2 + 79860 0.66 0.654922
Target:  5'- aUGUuGGGGUGGCGCGUGguccacgcGCGcGCgUGCg -3'
miRNA:   3'- cACGuUCCCGCUGCGCGU--------CGC-CG-ACG- -5'
6762 3' -60.5 NC_001875.2 + 73719 0.66 0.624562
Target:  5'- cUGUuGGGGUuggucgggagGugGCuGCGGCGGUUGUu -3'
miRNA:   3'- cACGuUCCCG----------CugCG-CGUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 94690 0.66 0.634687
Target:  5'- gGUGCuGGaacccGGCGAUGCGCAcGCGGaaagacGCa -3'
miRNA:   3'- -CACGuUC-----CCGCUGCGCGU-CGCCga----CG- -5'
6762 3' -60.5 NC_001875.2 + 105889 0.66 0.644809
Target:  5'- gGUGCAGuacccgauGGCGG-GCGCGGCGGCc-- -3'
miRNA:   3'- -CACGUUc-------CCGCUgCGCGUCGCCGacg -5'
6762 3' -60.5 NC_001875.2 + 65083 0.66 0.674081
Target:  5'- -cGCu-GGGCaagGACGCGCucaacgaGGCGGCcaaGCa -3'
miRNA:   3'- caCGuuCCCG---CUGCGCG-------UCGCCGa--CG- -5'
6762 3' -60.5 NC_001875.2 + 39169 0.67 0.564183
Target:  5'- -cGCGA-GGCGG-GC-CGGCGGUUGCg -3'
miRNA:   3'- caCGUUcCCGCUgCGcGUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 114489 0.67 0.594251
Target:  5'- uGUGCGgcAGcacucugacGCGGuCGCGCGGCGGC-GCa -3'
miRNA:   3'- -CACGU--UCc--------CGCU-GCGCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 112050 0.67 0.594251
Target:  5'- --aCAAGGGCGAguuugaacuaaUGCauuGGCGGCUGCc -3'
miRNA:   3'- cacGUUCCCGCU-----------GCGcg-UCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 109118 0.67 0.584193
Target:  5'- -gGUAuaGGcGGCGACG-GCGGCGGUcuugGCg -3'
miRNA:   3'- caCGU--UC-CCGCUGCgCGUCGCCGa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.