miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 3' -60.5 NC_001875.2 + 101992 0.74 0.247166
Target:  5'- uGUGCAuuGcGGCG-UGCGCGGCGGCgGUg -3'
miRNA:   3'- -CACGUu-C-CCGCuGCGCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 121436 0.74 0.247166
Target:  5'- aGUGCAGcGGGUGcCGCGCcacggcGCGGCgGCg -3'
miRNA:   3'- -CACGUU-CCCGCuGCGCGu-----CGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 37420 0.73 0.265341
Target:  5'- cGUGgAAGaGGcCGugGCGCAGuCGGCgGCc -3'
miRNA:   3'- -CACgUUC-CC-GCugCGCGUC-GCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 85858 0.73 0.271635
Target:  5'- uGUGCAc-GGCGAguuCGcCGCAGCGGCgGCu -3'
miRNA:   3'- -CACGUucCCGCU---GC-GCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 88240 0.73 0.278049
Target:  5'- -cGCAAGcGGCG-CGCGCcGCcGCUGCc -3'
miRNA:   3'- caCGUUC-CCGCuGCGCGuCGcCGACG- -5'
6762 3' -60.5 NC_001875.2 + 75240 0.73 0.278049
Target:  5'- -gGCGAcGGCGAUG-GCGGCGGCgucgGCg -3'
miRNA:   3'- caCGUUcCCGCUGCgCGUCGCCGa---CG- -5'
6762 3' -60.5 NC_001875.2 + 42739 0.73 0.284583
Target:  5'- -cGCGcGcGGCGACGCGCauggugAGCGGC-GCg -3'
miRNA:   3'- caCGUuC-CCGCUGCGCG------UCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 83321 0.73 0.298013
Target:  5'- -cGC-GGGGCG-CGCGCcgGGCGGC-GCg -3'
miRNA:   3'- caCGuUCCCGCuGCGCG--UCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 84381 0.72 0.318352
Target:  5'- cUGCcGGGGCGGCGuCGguagccggagcuuCGGCGGCgGCg -3'
miRNA:   3'- cACGuUCCCGCUGC-GC-------------GUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 84327 0.72 0.319071
Target:  5'- cUGCGguacccggAGcGGCgaGugGCGgAGCGGCUGCg -3'
miRNA:   3'- cACGU--------UC-CCG--CugCGCgUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 18190 0.72 0.326335
Target:  5'- gGUGCcggcGGGCGuAgGCGUGGUGGUUGCc -3'
miRNA:   3'- -CACGuu--CCCGC-UgCGCGUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 35515 0.71 0.356604
Target:  5'- -gGCAAcGGGCGGcCGCGCGuuauauacGCGGCUuauuGCg -3'
miRNA:   3'- caCGUU-CCCGCU-GCGCGU--------CGCCGA----CG- -5'
6762 3' -60.5 NC_001875.2 + 103323 0.71 0.356604
Target:  5'- cGUGCc-GGGCGACGCGUgcgcGaCGGCUaGCc -3'
miRNA:   3'- -CACGuuCCCGCUGCGCGu---C-GCCGA-CG- -5'
6762 3' -60.5 NC_001875.2 + 72567 0.71 0.364473
Target:  5'- -gGCGcGGGCGcGgGCGCuGCGGgUGCg -3'
miRNA:   3'- caCGUuCCCGC-UgCGCGuCGCCgACG- -5'
6762 3' -60.5 NC_001875.2 + 50009 0.71 0.364473
Target:  5'- -cGCGguuGGGGCG-CGCGUggucgccgGGCGGCgagGCg -3'
miRNA:   3'- caCGU---UCCCGCuGCGCG--------UCGCCGa--CG- -5'
6762 3' -60.5 NC_001875.2 + 128762 0.71 0.372462
Target:  5'- cGUGCAcgccguGGGCGACcccgGCGC-GCcGCUGCg -3'
miRNA:   3'- -CACGUu-----CCCGCUG----CGCGuCGcCGACG- -5'
6762 3' -60.5 NC_001875.2 + 100987 0.71 0.372462
Target:  5'- cUGCAGGccGCGGCGUuuGCGGCGGUuuUGCg -3'
miRNA:   3'- cACGUUCc-CGCUGCG--CGUCGCCG--ACG- -5'
6762 3' -60.5 NC_001875.2 + 73778 0.71 0.372462
Target:  5'- -gGUAgaAGGGuUGugGCgGCGGCGGCUGg -3'
miRNA:   3'- caCGU--UCCC-GCugCG-CGUCGCCGACg -5'
6762 3' -60.5 NC_001875.2 + 85294 0.71 0.372462
Target:  5'- uUGCGcGGGCGGCGCGgGcGCGGgcaUUGCc -3'
miRNA:   3'- cACGUuCCCGCUGCGCgU-CGCC---GACG- -5'
6762 3' -60.5 NC_001875.2 + 49344 0.71 0.37569
Target:  5'- cUGCAGcguGGGCGGCGggccguggugcaacaUGCGGCGGCgGUa -3'
miRNA:   3'- cACGUU---CCCGCUGC---------------GCGUCGCCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.