miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 3' -60.5 NC_001875.2 + 95238 1.11 0.000596
Target:  5'- gGUGCAAGGGCGACGCGCAGCGGCUGCg -3'
miRNA:   3'- -CACGUUCCCGCUGCGCGUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 39658 0.82 0.074917
Target:  5'- -cGCGAGuuugggccGGCGGCGCGCGGCGGCgaGCu -3'
miRNA:   3'- caCGUUC--------CCGCUGCGCGUCGCCGa-CG- -5'
6762 3' -60.5 NC_001875.2 + 73617 0.8 0.102685
Target:  5'- uUGCGGcGGCGGC-UGCGGCGGCUGCg -3'
miRNA:   3'- cACGUUcCCGCUGcGCGUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 23151 0.79 0.113928
Target:  5'- -cGCAgucgaAGGGCGGCuGCGggcaCGGCGGCUGCg -3'
miRNA:   3'- caCGU-----UCCCGCUG-CGC----GUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 100141 0.78 0.136411
Target:  5'- aUGCGccGGCGGCGCGCaAGCGGCgGUc -3'
miRNA:   3'- cACGUucCCGCUGCGCG-UCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 41704 0.78 0.139938
Target:  5'- -gGCcAGGGCGuAUGCGCGGC-GCUGCg -3'
miRNA:   3'- caCGuUCCCGC-UGCGCGUCGcCGACG- -5'
6762 3' -60.5 NC_001875.2 + 86940 0.78 0.143548
Target:  5'- aGUGCGAGGGCGAgccgccaGCGUccaAGCGGC-GCa -3'
miRNA:   3'- -CACGUUCCCGCUg------CGCG---UCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 73689 0.78 0.143548
Target:  5'- cUGCugcGGCGGCuGCuGCGGCGGCUGCg -3'
miRNA:   3'- cACGuucCCGCUG-CG-CGUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 3026 0.77 0.164552
Target:  5'- cGUGCAAguuguacacgccguuGGGCagcgcguaagaGGCGCGCAGCGGC-GCg -3'
miRNA:   3'- -CACGUU---------------CCCG-----------CUGCGCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 41343 0.77 0.167049
Target:  5'- cGUGCAAguGGGCcGCGCGCAguuugaacGCGcGCUGCa -3'
miRNA:   3'- -CACGUU--CCCGcUGCGCGU--------CGC-CGACG- -5'
6762 3' -60.5 NC_001875.2 + 73647 0.76 0.180052
Target:  5'- cUGCugcGGCGGC-UGCGGCGGCUGCg -3'
miRNA:   3'- cACGuucCCGCUGcGCGUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 22438 0.76 0.180052
Target:  5'- uUGCuccauuucGGGCGugGCGCGGUGGUUGa -3'
miRNA:   3'- cACGuu------CCCGCugCGCGUCGCCGACg -5'
6762 3' -60.5 NC_001875.2 + 32001 0.75 0.198778
Target:  5'- uUGUGAGcGGCGGCGaCGCAGCGcaCUGCg -3'
miRNA:   3'- cACGUUC-CCGCUGC-GCGUCGCc-GACG- -5'
6762 3' -60.5 NC_001875.2 + 36425 0.75 0.203718
Target:  5'- -cGCGAGGccuuaccuuuGCGACGC-CGGCGcGCUGCg -3'
miRNA:   3'- caCGUUCC----------CGCUGCGcGUCGC-CGACG- -5'
6762 3' -60.5 NC_001875.2 + 21069 0.75 0.203718
Target:  5'- -gGCGuuuuGGGCaaaaGACGCGCGGCGGCgGUc -3'
miRNA:   3'- caCGUu---CCCG----CUGCGCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 62462 0.75 0.21236
Target:  5'- cGUGCGuuucGGuGGaCGGCGCGCAGCGGgcgcacgccgcugaCUGCg -3'
miRNA:   3'- -CACGU----UC-CC-GCUGCGCGUCGCC--------------GACG- -5'
6762 3' -60.5 NC_001875.2 + 129965 0.75 0.219179
Target:  5'- -gGCGGcGGCGGCG-GCGGCGGCgGCg -3'
miRNA:   3'- caCGUUcCCGCUGCgCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 42189 0.74 0.235631
Target:  5'- -cGCGGuuGGGCGuuucaaauaGCGCGCGGCGGCacGCg -3'
miRNA:   3'- caCGUU--CCCGC---------UGCGCGUCGCCGa-CG- -5'
6762 3' -60.5 NC_001875.2 + 59700 0.74 0.235631
Target:  5'- cUGCAGuuuGGGCuGGCGagcgaGCAGCGGCUcGCg -3'
miRNA:   3'- cACGUU---CCCG-CUGCg----CGUCGCCGA-CG- -5'
6762 3' -60.5 NC_001875.2 + 39319 0.74 0.241342
Target:  5'- cGUGCc--GGCGGCGUGC-GCGcGCUGCa -3'
miRNA:   3'- -CACGuucCCGCUGCGCGuCGC-CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.