miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 3' -60.5 NC_001875.2 + 3026 0.77 0.164552
Target:  5'- cGUGCAAguuguacacgccguuGGGCagcgcguaagaGGCGCGCAGCGGC-GCg -3'
miRNA:   3'- -CACGUU---------------CCCG-----------CUGCGCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 3095 0.66 0.665017
Target:  5'- cGUGCAcgcgccGGGGCGcggcucGCgGCGCAGaccugGGCgGCg -3'
miRNA:   3'- -CACGU------UCCCGC------UG-CGCGUCg----CCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 3159 0.67 0.584193
Target:  5'- -gGCGucGGGCGGCGaguaggugaGcCGGCGGCcGCg -3'
miRNA:   3'- caCGUu-CCCGCUGCg--------C-GUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 3334 0.66 0.672069
Target:  5'- -aGCGGgacGGGCGccucguguccggucACGCGCAugagauaacgcGCGGCUGa -3'
miRNA:   3'- caCGUU---CCCGC--------------UGCGCGU-----------CGCCGACg -5'
6762 3' -60.5 NC_001875.2 + 9788 0.68 0.505449
Target:  5'- -cGCuccGGGGUguacuugcacGGCGCcauCGGCGGCUGCu -3'
miRNA:   3'- caCGu--UCCCG----------CUGCGc--GUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 9981 0.68 0.554245
Target:  5'- cGUGUAcAGGGCGuACGUGCAcGCGcUUGUg -3'
miRNA:   3'- -CACGU-UCCCGC-UGCGCGU-CGCcGACG- -5'
6762 3' -60.5 NC_001875.2 + 10650 0.69 0.458592
Target:  5'- cGUGCAGuacuuGGGCGGCggacugcacuugGCGCAG-GcGCUGCc -3'
miRNA:   3'- -CACGUU-----CCCGCUG------------CGCGUCgC-CGACG- -5'
6762 3' -60.5 NC_001875.2 + 10853 0.69 0.486443
Target:  5'- uGUGgAAGGuG-GACGaCGCGGUGGCcGCg -3'
miRNA:   3'- -CACgUUCC-CgCUGC-GCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 12517 0.66 0.654922
Target:  5'- -aGCGccuGGGGCG-CaGUGCGGgGGUUGUu -3'
miRNA:   3'- caCGU---UCCCGCuG-CGCGUCgCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 13906 0.68 0.524767
Target:  5'- -cGC---GGCGGCGCGCAcGCcGGcCUGCa -3'
miRNA:   3'- caCGuucCCGCUGCGCGU-CG-CC-GACG- -5'
6762 3' -60.5 NC_001875.2 + 16885 0.7 0.405586
Target:  5'- uUGUAu--GCGuACGCGCAGCGGCgccGCg -3'
miRNA:   3'- cACGUuccCGC-UGCGCGUCGCCGa--CG- -5'
6762 3' -60.5 NC_001875.2 + 17840 0.66 0.675087
Target:  5'- -cGCGAGGGCgccgaaaacGAgGUGCAGuCGGCc-- -3'
miRNA:   3'- caCGUUCCCG---------CUgCGCGUC-GCCGacg -5'
6762 3' -60.5 NC_001875.2 + 18190 0.72 0.326335
Target:  5'- gGUGCcggcGGGCGuAgGCGUGGUGGUUGCc -3'
miRNA:   3'- -CACGuu--CCCGC-UgCGCGUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 18437 0.68 0.505449
Target:  5'- -cGCGAGGcGCGGucCGCGUGGCGcGCgaaucGCg -3'
miRNA:   3'- caCGUUCC-CGCU--GCGCGUCGC-CGa----CG- -5'
6762 3' -60.5 NC_001875.2 + 18646 0.68 0.505449
Target:  5'- aUGCugguGGGC-ACGuCGCAgcgcgucacgguGCGGCUGCu -3'
miRNA:   3'- cACGuu--CCCGcUGC-GCGU------------CGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 19118 0.67 0.583188
Target:  5'- uGUGCGc--GCGACGCGCcuaccacGGCGGC-GCc -3'
miRNA:   3'- -CACGUuccCGCUGCGCG-------UCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 20807 0.7 0.397132
Target:  5'- aGUGCGcGGGCGuCGuCGCAGCGcUUGUc -3'
miRNA:   3'- -CACGUuCCCGCuGC-GCGUCGCcGACG- -5'
6762 3' -60.5 NC_001875.2 + 21069 0.75 0.203718
Target:  5'- -gGCGuuuuGGGCaaaaGACGCGCGGCGGCgGUc -3'
miRNA:   3'- caCGUu---CCCG----CUGCGCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 21755 0.67 0.604337
Target:  5'- -cGCGcGuGGCGgccuccACGCGCAGCGucuCUGCg -3'
miRNA:   3'- caCGUuC-CCGC------UGCGCGUCGCc--GACG- -5'
6762 3' -60.5 NC_001875.2 + 21961 0.66 0.675087
Target:  5'- -cGCGGggauGGGCGGCGC-CAGCGccaGCUugGCa -3'
miRNA:   3'- caCGUU----CCCGCUGCGcGUCGC---CGA--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.