miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 3' -60.5 NC_001875.2 + 92608 0.71 0.380569
Target:  5'- uGUGCAgAGuGGUGG-GCGCgAGCGGCUuGCg -3'
miRNA:   3'- -CACGU-UC-CCGCUgCGCG-UCGCCGA-CG- -5'
6762 3' -60.5 NC_001875.2 + 84381 0.72 0.318352
Target:  5'- cUGCcGGGGCGGCGuCGguagccggagcuuCGGCGGCgGCg -3'
miRNA:   3'- cACGuUCCCGCUGC-GC-------------GUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 84327 0.72 0.319071
Target:  5'- cUGCGguacccggAGcGGCgaGugGCGgAGCGGCUGCg -3'
miRNA:   3'- cACGU--------UC-CCG--CugCGCgUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 18190 0.72 0.326335
Target:  5'- gGUGCcggcGGGCGuAgGCGUGGUGGUUGCc -3'
miRNA:   3'- -CACGuu--CCCGC-UgCGCGUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 103323 0.71 0.356604
Target:  5'- cGUGCc-GGGCGACGCGUgcgcGaCGGCUaGCc -3'
miRNA:   3'- -CACGuuCCCGCUGCGCGu---C-GCCGA-CG- -5'
6762 3' -60.5 NC_001875.2 + 72567 0.71 0.364473
Target:  5'- -gGCGcGGGCGcGgGCGCuGCGGgUGCg -3'
miRNA:   3'- caCGUuCCCGC-UgCGCGuCGCCgACG- -5'
6762 3' -60.5 NC_001875.2 + 50009 0.71 0.364473
Target:  5'- -cGCGguuGGGGCG-CGCGUggucgccgGGCGGCgagGCg -3'
miRNA:   3'- caCGU---UCCCGCuGCGCG--------UCGCCGa--CG- -5'
6762 3' -60.5 NC_001875.2 + 85294 0.71 0.372462
Target:  5'- uUGCGcGGGCGGCGCGgGcGCGGgcaUUGCc -3'
miRNA:   3'- cACGUuCCCGCUGCGCgU-CGCC---GACG- -5'
6762 3' -60.5 NC_001875.2 + 128762 0.71 0.372462
Target:  5'- cGUGCAcgccguGGGCGACcccgGCGC-GCcGCUGCg -3'
miRNA:   3'- -CACGUu-----CCCGCUG----CGCGuCGcCGACG- -5'
6762 3' -60.5 NC_001875.2 + 42739 0.73 0.284583
Target:  5'- -cGCGcGcGGCGACGCGCauggugAGCGGC-GCg -3'
miRNA:   3'- caCGUuC-CCGCUGCGCG------UCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 75240 0.73 0.278049
Target:  5'- -gGCGAcGGCGAUG-GCGGCGGCgucgGCg -3'
miRNA:   3'- caCGUUcCCGCUGCgCGUCGCCGa---CG- -5'
6762 3' -60.5 NC_001875.2 + 88240 0.73 0.278049
Target:  5'- -cGCAAGcGGCG-CGCGCcGCcGCUGCc -3'
miRNA:   3'- caCGUUC-CCGCuGCGCGuCGcCGACG- -5'
6762 3' -60.5 NC_001875.2 + 41704 0.78 0.139938
Target:  5'- -gGCcAGGGCGuAUGCGCGGC-GCUGCg -3'
miRNA:   3'- caCGuUCCCGC-UGCGCGUCGcCGACG- -5'
6762 3' -60.5 NC_001875.2 + 32001 0.75 0.198778
Target:  5'- uUGUGAGcGGCGGCGaCGCAGCGcaCUGCg -3'
miRNA:   3'- cACGUUC-CCGCUGC-GCGUCGCc-GACG- -5'
6762 3' -60.5 NC_001875.2 + 62462 0.75 0.21236
Target:  5'- cGUGCGuuucGGuGGaCGGCGCGCAGCGGgcgcacgccgcugaCUGCg -3'
miRNA:   3'- -CACGU----UC-CC-GCUGCGCGUCGCC--------------GACG- -5'
6762 3' -60.5 NC_001875.2 + 59700 0.74 0.235631
Target:  5'- cUGCAGuuuGGGCuGGCGagcgaGCAGCGGCUcGCg -3'
miRNA:   3'- cACGUU---CCCG-CUGCg----CGUCGCCGA-CG- -5'
6762 3' -60.5 NC_001875.2 + 42189 0.74 0.235631
Target:  5'- -cGCGGuuGGGCGuuucaaauaGCGCGCGGCGGCacGCg -3'
miRNA:   3'- caCGUU--CCCGC---------UGCGCGUCGCCGa-CG- -5'
6762 3' -60.5 NC_001875.2 + 39319 0.74 0.241342
Target:  5'- cGUGCc--GGCGGCGUGC-GCGcGCUGCa -3'
miRNA:   3'- -CACGuucCCGCUGCGCGuCGC-CGACG- -5'
6762 3' -60.5 NC_001875.2 + 37420 0.73 0.265341
Target:  5'- cGUGgAAGaGGcCGugGCGCAGuCGGCgGCc -3'
miRNA:   3'- -CACgUUC-CC-GCugCGCGUC-GCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 85858 0.73 0.271635
Target:  5'- uGUGCAc-GGCGAguuCGcCGCAGCGGCgGCu -3'
miRNA:   3'- -CACGUucCCGCU---GC-GCGUCGCCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.