miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 3' -60.5 NC_001875.2 + 72342 0.66 0.633674
Target:  5'- -gGCAcauGGGGCacucGACGCGCuugucucGGCcGcGCUGCg -3'
miRNA:   3'- caCGU---UCCCG----CUGCGCG-------UCG-C-CGACG- -5'
6762 3' -60.5 NC_001875.2 + 73719 0.66 0.624562
Target:  5'- cUGUuGGGGUuggucgggagGugGCuGCGGCGGUUGUu -3'
miRNA:   3'- cACGuUCCCG----------CugCG-CGUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 44540 0.66 0.634687
Target:  5'- -aGCA---GCGuCGCGCGGCgugccgGGCUGCa -3'
miRNA:   3'- caCGUuccCGCuGCGCGUCG------CCGACG- -5'
6762 3' -60.5 NC_001875.2 + 111799 0.66 0.665017
Target:  5'- gGUGCAcGcGGcCGACgGCGCc-UGGCUGCu -3'
miRNA:   3'- -CACGUuC-CC-GCUG-CGCGucGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 74805 0.66 0.675087
Target:  5'- -aGCugGAGuaCGACGCGCccAGCGGC-GCg -3'
miRNA:   3'- caCG--UUCccGCUGCGCG--UCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 38300 0.66 0.634687
Target:  5'- -cGCGGuGGCGA-GCGCcgacaaggccGGCGGCaUGCa -3'
miRNA:   3'- caCGUUcCCGCUgCGCG----------UCGCCG-ACG- -5'
6762 3' -60.5 NC_001875.2 + 62415 0.66 0.644809
Target:  5'- uUGCGuGGGCaagcguuuGCGCuGCGcCGGCUGCa -3'
miRNA:   3'- cACGUuCCCGc-------UGCG-CGUcGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 84437 0.66 0.634687
Target:  5'- -gGCGgaucGGGaGCGGCG-GCGGCGGUagaccaugaUGCg -3'
miRNA:   3'- caCGU----UCC-CGCUGCgCGUCGCCG---------ACG- -5'
6762 3' -60.5 NC_001875.2 + 119769 0.66 0.634687
Target:  5'- gGUGCGucugacGGGCGACGUGUAcGCuGUUGa -3'
miRNA:   3'- -CACGUu-----CCCGCUGCGCGU-CGcCGACg -5'
6762 3' -60.5 NC_001875.2 + 40461 0.66 0.675087
Target:  5'- -aGCcccGAGGGCGugGUGguGCcgGGCg-- -3'
miRNA:   3'- caCG---UUCCCGCugCGCguCG--CCGacg -5'
6762 3' -60.5 NC_001875.2 + 21961 0.66 0.675087
Target:  5'- -cGCGGggauGGGCGGCGC-CAGCGccaGCUugGCa -3'
miRNA:   3'- caCGUU----CCCGCUGCGcGUCGC---CGA--CG- -5'
6762 3' -60.5 NC_001875.2 + 68709 0.66 0.675087
Target:  5'- cGUGCGccGGCcGCGCGCc-CGGCcGCu -3'
miRNA:   3'- -CACGUucCCGcUGCGCGucGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 30430 0.66 0.675087
Target:  5'- cGUGCAGcaaaGCGuccaACGCGCAGCuGGC-GCg -3'
miRNA:   3'- -CACGUUcc--CGC----UGCGCGUCG-CCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 107957 0.66 0.624562
Target:  5'- cGUGCAcgaauucGGCGACaccaGCAaCGGCUGCa -3'
miRNA:   3'- -CACGUuc-----CCGCUGcg--CGUcGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 40285 0.66 0.624562
Target:  5'- -cGUAcGuGGCGGCGgGCAaCGgGCUGCa -3'
miRNA:   3'- caCGUuC-CCGCUGCgCGUcGC-CGACG- -5'
6762 3' -60.5 NC_001875.2 + 114659 0.66 0.654922
Target:  5'- uGUGCuauuuuuGGCGGUGCGuCAGCGGCgaccgUGCu -3'
miRNA:   3'- -CACGuuc----CCGCUGCGC-GUCGCCG-----ACG- -5'
6762 3' -60.5 NC_001875.2 + 33039 0.66 0.624562
Target:  5'- -cGCGGcGGGCGcCGCGCcgcGCGGauaGCg -3'
miRNA:   3'- caCGUU-CCCGCuGCGCGu--CGCCga-CG- -5'
6762 3' -60.5 NC_001875.2 + 115072 0.66 0.675087
Target:  5'- -aGCuuuacGCGGCGCGCAGUcacgacgccgGGCUGUc -3'
miRNA:   3'- caCGuucc-CGCUGCGCGUCG----------CCGACG- -5'
6762 3' -60.5 NC_001875.2 + 29403 0.66 0.624562
Target:  5'- -gGCAAGGGCGccaacccgGCGCucgGCAaCGGCgaGCg -3'
miRNA:   3'- caCGUUCCCGC--------UGCG---CGUcGCCGa-CG- -5'
6762 3' -60.5 NC_001875.2 + 12517 0.66 0.654922
Target:  5'- -aGCGccuGGGGCG-CaGUGCGGgGGUUGUu -3'
miRNA:   3'- caCGU---UCCCGCuG-CGCGUCgCCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.