miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 3' -60.5 NC_001875.2 + 22438 0.76 0.180052
Target:  5'- uUGCuccauuucGGGCGugGCGCGGUGGUUGa -3'
miRNA:   3'- cACGuu------CCCGCugCGCGUCGCCGACg -5'
6762 3' -60.5 NC_001875.2 + 22578 0.69 0.477068
Target:  5'- -cGCccGGGcGCGGCGCGUuggccGGcCGGCUGUa -3'
miRNA:   3'- caCGu-UCC-CGCUGCGCG-----UC-GCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 23151 0.79 0.113928
Target:  5'- -cGCAgucgaAGGGCGGCuGCGggcaCGGCGGCUGCg -3'
miRNA:   3'- caCGU-----UCCCGCUG-CGC----GUCGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 24010 0.67 0.594251
Target:  5'- -cGCAAGGcGCaccgGGCGCGggcuCGGCGGUcGCg -3'
miRNA:   3'- caCGUUCC-CG----CUGCGC----GUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 24280 0.66 0.654922
Target:  5'- uGUGCGAcGGCGcCGCGCuuguccauagGGCGGauaUGUu -3'
miRNA:   3'- -CACGUUcCCGCuGCGCG----------UCGCCg--ACG- -5'
6762 3' -60.5 NC_001875.2 + 29286 0.67 0.604337
Target:  5'- -gGCGGGGcGCGGuCGUGUGGCGuGUcgUGCg -3'
miRNA:   3'- caCGUUCC-CGCU-GCGCGUCGC-CG--ACG- -5'
6762 3' -60.5 NC_001875.2 + 29403 0.66 0.624562
Target:  5'- -gGCAAGGGCGccaacccgGCGCucgGCAaCGGCgaGCg -3'
miRNA:   3'- caCGUUCCCGC--------UGCG---CGUcGCCGa-CG- -5'
6762 3' -60.5 NC_001875.2 + 30430 0.66 0.675087
Target:  5'- cGUGCAGcaaaGCGuccaACGCGCAGCuGGC-GCg -3'
miRNA:   3'- -CACGUUcc--CGC----UGCGCGUCG-CCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 30925 0.67 0.584193
Target:  5'- -aGCGAGcgcGGCGagcgucuccGCGCGCuGCGGC-GCc -3'
miRNA:   3'- caCGUUC---CCGC---------UGCGCGuCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 31199 0.7 0.397132
Target:  5'- -gGUggGGGCuGACGCGCAc--GCUGCu -3'
miRNA:   3'- caCGuuCCCG-CUGCGCGUcgcCGACG- -5'
6762 3' -60.5 NC_001875.2 + 32001 0.75 0.198778
Target:  5'- uUGUGAGcGGCGGCGaCGCAGCGcaCUGCg -3'
miRNA:   3'- cACGUUC-CCGCUGC-GCGUCGCc-GACG- -5'
6762 3' -60.5 NC_001875.2 + 33039 0.66 0.624562
Target:  5'- -cGCGGcGGGCGcCGCGCcgcGCGGauaGCg -3'
miRNA:   3'- caCGUU-CCCGCuGCGCGu--CGCCga-CG- -5'
6762 3' -60.5 NC_001875.2 + 33308 0.67 0.564183
Target:  5'- cUGCGGGuuGGCGAgCGCGUGGC-GUUGCc -3'
miRNA:   3'- cACGUUC--CCGCU-GCGCGUCGcCGACG- -5'
6762 3' -60.5 NC_001875.2 + 33964 0.68 0.554245
Target:  5'- cGUGCccGuGCGGCGCGCAGCcgaccGGCacguUGCa -3'
miRNA:   3'- -CACGuuCcCGCUGCGCGUCG-----CCG----ACG- -5'
6762 3' -60.5 NC_001875.2 + 34350 0.68 0.543374
Target:  5'- -aGCAAGcGcGCGGCGCaagagacGCAGuuGCUGCc -3'
miRNA:   3'- caCGUUC-C-CGCUGCG-------CGUCgcCGACG- -5'
6762 3' -60.5 NC_001875.2 + 35515 0.71 0.356604
Target:  5'- -gGCAAcGGGCGGcCGCGCGuuauauacGCGGCUuauuGCg -3'
miRNA:   3'- caCGUU-CCCGCU-GCGCGU--------CGCCGA----CG- -5'
6762 3' -60.5 NC_001875.2 + 36425 0.75 0.203718
Target:  5'- -cGCGAGGccuuaccuuuGCGACGC-CGGCGcGCUGCg -3'
miRNA:   3'- caCGUUCC----------CGCUGCGcGUCGC-CGACG- -5'
6762 3' -60.5 NC_001875.2 + 36803 0.69 0.486443
Target:  5'- cUGCAcGGuGCGcguuACGCGCcGCGGCaguUGCg -3'
miRNA:   3'- cACGUuCC-CGC----UGCGCGuCGCCG---ACG- -5'
6762 3' -60.5 NC_001875.2 + 37042 0.67 0.604337
Target:  5'- cGUGCAcGGcGCGugcacGCGCGCGgacGCGGCcacGCu -3'
miRNA:   3'- -CACGUuCC-CGC-----UGCGCGU---CGCCGa--CG- -5'
6762 3' -60.5 NC_001875.2 + 37110 0.69 0.449497
Target:  5'- uGUGCGGGcGCGGCGcCGCGcCGGCguuUGCg -3'
miRNA:   3'- -CACGUUCcCGCUGC-GCGUcGCCG---ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.