miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 3' -60.5 NC_001875.2 + 131494 0.71 0.387965
Target:  5'- cGUGCAgaucgacAGucuGCGGCGCGCggugcAGCGGCUGg -3'
miRNA:   3'- -CACGU-------UCc--CGCUGCGCG-----UCGCCGACg -5'
6762 3' -60.5 NC_001875.2 + 130060 0.68 0.544359
Target:  5'- ----uGGcGGCGGCG-GCGGCGGCaUGCu -3'
miRNA:   3'- cacguUC-CCGCUGCgCGUCGCCG-ACG- -5'
6762 3' -60.5 NC_001875.2 + 130011 0.68 0.534532
Target:  5'- --cCAuuGGCGGCG-GCGGCGGCaUGCu -3'
miRNA:   3'- cacGUucCCGCUGCgCGUCGCCG-ACG- -5'
6762 3' -60.5 NC_001875.2 + 129965 0.75 0.219179
Target:  5'- -gGCGGcGGCGGCG-GCGGCGGCgGCg -3'
miRNA:   3'- caCGUUcCCGCUGCgCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 128762 0.71 0.372462
Target:  5'- cGUGCAcgccguGGGCGACcccgGCGC-GCcGCUGCg -3'
miRNA:   3'- -CACGUu-----CCCGCUG----CGCGuCGcCGACG- -5'
6762 3' -60.5 NC_001875.2 + 127240 0.66 0.665017
Target:  5'- cGUGUuuGAGcGCGGCcucuucguGCGCAugucgggcauGCGGCUGCu -3'
miRNA:   3'- -CACG--UUCcCGCUG--------CGCGU----------CGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 124999 0.67 0.574168
Target:  5'- cGUGCAAGuuGGCGuCGgGCAcguugucgacGCGGC-GCa -3'
miRNA:   3'- -CACGUUC--CCGCuGCgCGU----------CGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 124721 0.67 0.581181
Target:  5'- -gGCAAGcGGCG-CGUggcggucaaugucgGCAGCGcgcGCUGCa -3'
miRNA:   3'- caCGUUC-CCGCuGCG--------------CGUCGC---CGACG- -5'
6762 3' -60.5 NC_001875.2 + 121436 0.74 0.247166
Target:  5'- aGUGCAGcGGGUGcCGCGCcacggcGCGGCgGCg -3'
miRNA:   3'- -CACGUU-CCCGCuGCGCGu-----CGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 120286 0.67 0.564183
Target:  5'- -cGCuucGGCGGCGCGUacgaaauuGGCGGUUGg -3'
miRNA:   3'- caCGuucCCGCUGCGCG--------UCGCCGACg -5'
6762 3' -60.5 NC_001875.2 + 119769 0.66 0.634687
Target:  5'- gGUGCGucugacGGGCGACGUGUAcGCuGUUGa -3'
miRNA:   3'- -CACGUu-----CCCGCUGCGCGU-CGcCGACg -5'
6762 3' -60.5 NC_001875.2 + 119660 0.7 0.414152
Target:  5'- -gGCAaaccucGGcGGCGGCGCaCAGCGGCUucaGCc -3'
miRNA:   3'- caCGU------UC-CCGCUGCGcGUCGCCGA---CG- -5'
6762 3' -60.5 NC_001875.2 + 119546 0.71 0.380569
Target:  5'- -cGCAcacGGCGGCGUGC--CGGCUGCa -3'
miRNA:   3'- caCGUuc-CCGCUGCGCGucGCCGACG- -5'
6762 3' -60.5 NC_001875.2 + 116617 0.68 0.524767
Target:  5'- uGUGCucguuGGGGCGcuuguacuCGCGCAGCaaccGCUGg -3'
miRNA:   3'- -CACGu----UCCCGCu-------GCGCGUCGc---CGACg -5'
6762 3' -60.5 NC_001875.2 + 115300 0.71 0.388792
Target:  5'- --aCGAGGGCGcCGaCGUGGCGGC-GCa -3'
miRNA:   3'- cacGUUCCCGCuGC-GCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 115072 0.66 0.675087
Target:  5'- -aGCuuuacGCGGCGCGCAGUcacgacgccgGGCUGUc -3'
miRNA:   3'- caCGuucc-CGCUGCGCGUCG----------CCGACG- -5'
6762 3' -60.5 NC_001875.2 + 114659 0.66 0.654922
Target:  5'- uGUGCuauuuuuGGCGGUGCGuCAGCGGCgaccgUGCu -3'
miRNA:   3'- -CACGuuc----CCGCUGCGC-GUCGCCG-----ACG- -5'
6762 3' -60.5 NC_001875.2 + 114489 0.67 0.594251
Target:  5'- uGUGCGgcAGcacucugacGCGGuCGCGCGGCGGC-GCa -3'
miRNA:   3'- -CACGU--UCc--------CGCU-GCGCGUCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 113603 0.68 0.515072
Target:  5'- cGUuCGAGucGGCGGCGgGCcGCGGCgGCa -3'
miRNA:   3'- -CAcGUUC--CCGCUGCgCGuCGCCGaCG- -5'
6762 3' -60.5 NC_001875.2 + 113539 0.67 0.584193
Target:  5'- -gGCGgcGGGGCcaauaaGCGCGCgaAGCGGCcuugUGCg -3'
miRNA:   3'- caCGU--UCCCGc-----UGCGCG--UCGCCG----ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.