miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 5' -55.6 NC_001875.2 + 91884 0.68 0.73561
Target:  5'- cUGguGCGGCgGCGgGUcGGGCAACc- -3'
miRNA:   3'- aACguUGUCGgCGCgCA-CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 43310 0.68 0.73561
Target:  5'- -gGUAGCGGCgCGCGCGcGGGuCGGCg- -3'
miRNA:   3'- aaCGUUGUCG-GCGCGCaCCU-GUUGaa -5'
6762 5' -55.6 NC_001875.2 + 73629 0.68 0.73561
Target:  5'- cUGCGGCGGCUGCGgCGgcugcUGcGGCGGCUg -3'
miRNA:   3'- aACGUUGUCGGCGC-GC-----AC-CUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 7258 0.68 0.725372
Target:  5'- cUGCAGCGGCCugGCGCG-GGucgcCGACg- -3'
miRNA:   3'- aACGUUGUCGG--CGCGCaCCu---GUUGaa -5'
6762 5' -55.6 NC_001875.2 + 43019 0.68 0.725372
Target:  5'- aUUGCGAguGCCGCGCGcc-GCGGCg- -3'
miRNA:   3'- -AACGUUguCGGCGCGCaccUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 31047 0.68 0.715047
Target:  5'- -gGC-GCGGCCGUaCGUcGGACAACUg -3'
miRNA:   3'- aaCGuUGUCGGCGcGCA-CCUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 58757 0.68 0.715047
Target:  5'- -aGCGuACuGCuCGCGCGUGGcCAACg- -3'
miRNA:   3'- aaCGU-UGuCG-GCGCGCACCuGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 66949 0.69 0.704646
Target:  5'- -cGCGACAGCUGaGCGUcGACGACc- -3'
miRNA:   3'- aaCGUUGUCGGCgCGCAcCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 54152 0.69 0.700466
Target:  5'- -gGCGGCAGUCGCGCaaauacgcgcucGGACAGCg- -3'
miRNA:   3'- aaCGUUGUCGGCGCGca----------CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 85822 0.69 0.694178
Target:  5'- -cGCGGC-GCCaGCuGCGUGGGCGGCc- -3'
miRNA:   3'- aaCGUUGuCGG-CG-CGCACCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 2872 0.69 0.694178
Target:  5'- -aGCAGCGGUUgggGCGCGUGGgacGCAugUUg -3'
miRNA:   3'- aaCGUUGUCGG---CGCGCACC---UGUugAA- -5'
6762 5' -55.6 NC_001875.2 + 2661 0.69 0.673084
Target:  5'- cUUGCGGCgccGGCgGCGCcugGGGCAACUg -3'
miRNA:   3'- -AACGUUG---UCGgCGCGca-CCUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 98484 0.69 0.666724
Target:  5'- uUUGCGACuGCCGCGUGcgugauuggcugccGGGCGACg- -3'
miRNA:   3'- -AACGUUGuCGGCGCGCa-------------CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 120789 0.69 0.662478
Target:  5'- cUGCuGCAGUuugCGCGCGUGGugAaACUg -3'
miRNA:   3'- aACGuUGUCG---GCGCGCACCugU-UGAa -5'
6762 5' -55.6 NC_001875.2 + 118104 0.69 0.662478
Target:  5'- -cGCGAC-GCCGCGCGaguggUGGAgAGCa- -3'
miRNA:   3'- aaCGUUGuCGGCGCGC-----ACCUgUUGaa -5'
6762 5' -55.6 NC_001875.2 + 7087 0.69 0.661416
Target:  5'- -gGCGGCAGCUacuacguGCGCGgcucGGACGGCg- -3'
miRNA:   3'- aaCGUUGUCGG-------CGCGCa---CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 121891 0.69 0.651845
Target:  5'- -gGCuauaAGCCG-GCGUGGGCAGCa- -3'
miRNA:   3'- aaCGuug-UCGGCgCGCACCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 47681 0.7 0.630537
Target:  5'- -cGCGGCGcGCCGCGCGUuucucaacgcgGGGCAAgUg -3'
miRNA:   3'- aaCGUUGU-CGGCGCGCA-----------CCUGUUgAa -5'
6762 5' -55.6 NC_001875.2 + 108736 0.7 0.630537
Target:  5'- -cGCAGCGGCCuuugGCG-GGGCAGCUg -3'
miRNA:   3'- aaCGUUGUCGGcg--CGCaCCUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 95522 0.7 0.619881
Target:  5'- -cGCAACAGCCccaGCGCG-GGAUcGCa- -3'
miRNA:   3'- aaCGUUGUCGG---CGCGCaCCUGuUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.