miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 5' -55.6 NC_001875.2 + 33479 0.67 0.81313
Target:  5'- -aGUGGCGcGCCGCGCGcUGGGguGCg- -3'
miRNA:   3'- aaCGUUGU-CGGCGCGC-ACCUguUGaa -5'
6762 5' -55.6 NC_001875.2 + 12294 0.67 0.81313
Target:  5'- gUGCAGCcggcacGCCGCcguguGCGUGGuCAACg- -3'
miRNA:   3'- aACGUUGu-----CGGCG-----CGCACCuGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 91253 0.67 0.803961
Target:  5'- gUGCGGCAaguugauuacGuaGCGCGcGGGCAACUUg -3'
miRNA:   3'- aACGUUGU----------CggCGCGCaCCUGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 68710 0.67 0.803961
Target:  5'- gUGCGcCGGCCGCGCGcccGGCcGCUa -3'
miRNA:   3'- aACGUuGUCGGCGCGCac-CUGuUGAa -5'
6762 5' -55.6 NC_001875.2 + 44551 0.67 0.803961
Target:  5'- -cGUugGGCAGCCGCGCGUu-GCGACa- -3'
miRNA:   3'- aaCG--UUGUCGGCGCGCAccUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 59722 0.67 0.803034
Target:  5'- -aGCAGCGGCuCGCGCuggagcaGUGGuuCAGCa- -3'
miRNA:   3'- aaCGUUGUCG-GCGCG-------CACCu-GUUGaa -5'
6762 5' -55.6 NC_001875.2 + 94472 0.67 0.794623
Target:  5'- cUGCAGCGGCgCGCGCGUucGCAcgaGCg- -3'
miRNA:   3'- aACGUUGUCG-GCGCGCAccUGU---UGaa -5'
6762 5' -55.6 NC_001875.2 + 98926 0.67 0.794623
Target:  5'- -gGCGcCGGuuGCGCGUGcGCGACg- -3'
miRNA:   3'- aaCGUuGUCggCGCGCACcUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 32571 0.67 0.785126
Target:  5'- cUGCAGCAguGCCGCGCGcaccuCGACUa -3'
miRNA:   3'- aACGUUGU--CGGCGCGCaccu-GUUGAa -5'
6762 5' -55.6 NC_001875.2 + 34640 0.67 0.785126
Target:  5'- gUGCAucauggaGGCCGC-CGUGGGCAAgUg -3'
miRNA:   3'- aACGUug-----UCGGCGcGCACCUGUUgAa -5'
6762 5' -55.6 NC_001875.2 + 99913 0.67 0.77548
Target:  5'- -cGCAACgagcgGGCCGCGCGcgcGGuGCAGCg- -3'
miRNA:   3'- aaCGUUG-----UCGGCGCGCa--CC-UGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 101993 0.67 0.765696
Target:  5'- gUGCAuuGCGGCgUGCGCGgcggcGGugGACUg -3'
miRNA:   3'- aACGU--UGUCG-GCGCGCa----CCugUUGAa -5'
6762 5' -55.6 NC_001875.2 + 113100 0.67 0.765696
Target:  5'- -cGCcuUAGCCGC-CGUGGugAGCg- -3'
miRNA:   3'- aaCGuuGUCGGCGcGCACCugUUGaa -5'
6762 5' -55.6 NC_001875.2 + 35515 0.67 0.765696
Target:  5'- -gGCAacggGCGGCCGCGCGUuauauacGCGGCUUa -3'
miRNA:   3'- aaCGU----UGUCGGCGCGCAcc-----UGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 70185 0.68 0.755782
Target:  5'- -cGCAGCgAGCCGgGCG-GcGACGGCg- -3'
miRNA:   3'- aaCGUUG-UCGGCgCGCaC-CUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 73692 0.68 0.755782
Target:  5'- cUGCGGCGGCUGCuGCGgcGGcuGCGGCUg -3'
miRNA:   3'- aACGUUGUCGGCG-CGCa-CC--UGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 89990 0.68 0.745749
Target:  5'- gUUGCAGCucGCCGcCGCGgcgcGGCAACUg -3'
miRNA:   3'- -AACGUUGu-CGGC-GCGCac--CUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 104148 0.68 0.745749
Target:  5'- gUGCGgcucaaACGGCgGCGCGaUGGcgACAACUUg -3'
miRNA:   3'- aACGU------UGUCGgCGCGC-ACC--UGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 75589 0.68 0.74474
Target:  5'- -gGCAaaguacuGCAGCCGCGCGccGGCGugUa -3'
miRNA:   3'- aaCGU-------UGUCGGCGCGCacCUGUugAa -5'
6762 5' -55.6 NC_001875.2 + 43310 0.68 0.73561
Target:  5'- -gGUAGCGGCgCGCGCGcGGGuCGGCg- -3'
miRNA:   3'- aaCGUUGUCG-GCGCGCaCCU-GUUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.