miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 5' -55.6 NC_001875.2 + 85822 0.69 0.694178
Target:  5'- -cGCGGC-GCCaGCuGCGUGGGCGGCc- -3'
miRNA:   3'- aaCGUUGuCGG-CG-CGCACCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 54152 0.69 0.700466
Target:  5'- -gGCGGCAGUCGCGCaaauacgcgcucGGACAGCg- -3'
miRNA:   3'- aaCGUUGUCGGCGCGca----------CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 66949 0.69 0.704646
Target:  5'- -cGCGACAGCUGaGCGUcGACGACc- -3'
miRNA:   3'- aaCGUUGUCGGCgCGCAcCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 58757 0.68 0.715047
Target:  5'- -aGCGuACuGCuCGCGCGUGGcCAACg- -3'
miRNA:   3'- aaCGU-UGuCG-GCGCGCACCuGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 31047 0.68 0.715047
Target:  5'- -gGC-GCGGCCGUaCGUcGGACAACUg -3'
miRNA:   3'- aaCGuUGUCGGCGcGCA-CCUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 7258 0.68 0.725372
Target:  5'- cUGCAGCGGCCugGCGCG-GGucgcCGACg- -3'
miRNA:   3'- aACGUUGUCGG--CGCGCaCCu---GUUGaa -5'
6762 5' -55.6 NC_001875.2 + 43019 0.68 0.725372
Target:  5'- aUUGCGAguGCCGCGCGcc-GCGGCg- -3'
miRNA:   3'- -AACGUUguCGGCGCGCaccUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 43310 0.68 0.73561
Target:  5'- -gGUAGCGGCgCGCGCGcGGGuCGGCg- -3'
miRNA:   3'- aaCGUUGUCG-GCGCGCaCCU-GUUGaa -5'
6762 5' -55.6 NC_001875.2 + 6917 0.68 0.73561
Target:  5'- gUGCGcuCGGCCGaggGCGUGGACcGCg- -3'
miRNA:   3'- aACGUu-GUCGGCg--CGCACCUGuUGaa -5'
6762 5' -55.6 NC_001875.2 + 73629 0.68 0.73561
Target:  5'- cUGCGGCGGCUGCGgCGgcugcUGcGGCGGCUg -3'
miRNA:   3'- aACGUUGUCGGCGC-GC-----AC-CUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 91884 0.68 0.73561
Target:  5'- cUGguGCGGCgGCGgGUcGGGCAACc- -3'
miRNA:   3'- aACguUGUCGgCGCgCA-CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 75589 0.68 0.74474
Target:  5'- -gGCAaaguacuGCAGCCGCGCGccGGCGugUa -3'
miRNA:   3'- aaCGU-------UGUCGGCGCGCacCUGUugAa -5'
6762 5' -55.6 NC_001875.2 + 104148 0.68 0.745749
Target:  5'- gUGCGgcucaaACGGCgGCGCGaUGGcgACAACUUg -3'
miRNA:   3'- aACGU------UGUCGgCGCGC-ACC--UGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 89990 0.68 0.745749
Target:  5'- gUUGCAGCucGCCGcCGCGgcgcGGCAACUg -3'
miRNA:   3'- -AACGUUGu-CGGC-GCGCac--CUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 70185 0.68 0.755782
Target:  5'- -cGCAGCgAGCCGgGCG-GcGACGGCg- -3'
miRNA:   3'- aaCGUUG-UCGGCgCGCaC-CUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 73692 0.68 0.755782
Target:  5'- cUGCGGCGGCUGCuGCGgcGGcuGCGGCUg -3'
miRNA:   3'- aACGUUGUCGGCG-CGCa-CC--UGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 113100 0.67 0.765696
Target:  5'- -cGCcuUAGCCGC-CGUGGugAGCg- -3'
miRNA:   3'- aaCGuuGUCGGCGcGCACCugUUGaa -5'
6762 5' -55.6 NC_001875.2 + 35515 0.67 0.765696
Target:  5'- -gGCAacggGCGGCCGCGCGUuauauacGCGGCUUa -3'
miRNA:   3'- aaCGU----UGUCGGCGCGCAcc-----UGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 101993 0.67 0.765696
Target:  5'- gUGCAuuGCGGCgUGCGCGgcggcGGugGACUg -3'
miRNA:   3'- aACGU--UGUCG-GCGCGCa----CCugUUGAa -5'
6762 5' -55.6 NC_001875.2 + 99913 0.67 0.77548
Target:  5'- -cGCAACgagcgGGCCGCGCGcgcGGuGCAGCg- -3'
miRNA:   3'- aaCGUUG-----UCGGCGCGCa--CC-UGUUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.