miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 5' -55.6 NC_001875.2 + 95272 1.03 0.004407
Target:  5'- uUUGCAACAGCCGCGCGUGGACAACUUg -3'
miRNA:   3'- -AACGUUGUCGGCGCGCACCUGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 29778 0.73 0.465452
Target:  5'- aUGU-ACGGCCGCGgGUGGACGGg-- -3'
miRNA:   3'- aACGuUGUCGGCGCgCACCUGUUgaa -5'
6762 5' -55.6 NC_001875.2 + 100875 0.73 0.475204
Target:  5'- -cGCGaggcGCAGCgCGCGCGUGGGCGcCa- -3'
miRNA:   3'- aaCGU----UGUCG-GCGCGCACCUGUuGaa -5'
6762 5' -55.6 NC_001875.2 + 21744 0.72 0.495007
Target:  5'- cUUGCucUGGCCGCGCGUGG-CGGCc- -3'
miRNA:   3'- -AACGuuGUCGGCGCGCACCuGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 51964 0.72 0.495007
Target:  5'- gUGCcGCAcGCgCGCGCGUGGACcACg- -3'
miRNA:   3'- aACGuUGU-CG-GCGCGCACCUGuUGaa -5'
6762 5' -55.6 NC_001875.2 + 67150 0.72 0.505048
Target:  5'- cUGCGGCuGuCUGCGCG-GGACAGCg- -3'
miRNA:   3'- aACGUUGuC-GGCGCGCaCCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 91194 0.72 0.515176
Target:  5'- -cGCAACAGCCgGCGCGUGcGCGcccaguugaGCUUg -3'
miRNA:   3'- aaCGUUGUCGG-CGCGCACcUGU---------UGAA- -5'
6762 5' -55.6 NC_001875.2 + 101402 0.72 0.515176
Target:  5'- -cGCGcCAGCUGCGCGuUGGACGcuuuGCUg -3'
miRNA:   3'- aaCGUuGUCGGCGCGC-ACCUGU----UGAa -5'
6762 5' -55.6 NC_001875.2 + 47939 0.72 0.525385
Target:  5'- cUGCAACAGgCGUGCGcGGACAccgACa- -3'
miRNA:   3'- aACGUUGUCgGCGCGCaCCUGU---UGaa -5'
6762 5' -55.6 NC_001875.2 + 91444 0.71 0.546024
Target:  5'- -aGCugAGCGGCgGCGCGUGGGCGcGCa- -3'
miRNA:   3'- aaCG--UUGUCGgCGCGCACCUGU-UGaa -5'
6762 5' -55.6 NC_001875.2 + 95522 0.7 0.619881
Target:  5'- -cGCAACAGCCccaGCGCG-GGAUcGCa- -3'
miRNA:   3'- aaCGUUGUCGG---CGCGCaCCUGuUGaa -5'
6762 5' -55.6 NC_001875.2 + 47681 0.7 0.630537
Target:  5'- -cGCGGCGcGCCGCGCGUuucucaacgcgGGGCAAgUg -3'
miRNA:   3'- aaCGUUGU-CGGCGCGCA-----------CCUGUUgAa -5'
6762 5' -55.6 NC_001875.2 + 108736 0.7 0.630537
Target:  5'- -cGCAGCGGCCuuugGCG-GGGCAGCUg -3'
miRNA:   3'- aaCGUUGUCGGcg--CGCaCCUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 121891 0.69 0.651845
Target:  5'- -gGCuauaAGCCG-GCGUGGGCAGCa- -3'
miRNA:   3'- aaCGuug-UCGGCgCGCACCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 7087 0.69 0.661416
Target:  5'- -gGCGGCAGCUacuacguGCGCGgcucGGACGGCg- -3'
miRNA:   3'- aaCGUUGUCGG-------CGCGCa---CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 120789 0.69 0.662478
Target:  5'- cUGCuGCAGUuugCGCGCGUGGugAaACUg -3'
miRNA:   3'- aACGuUGUCG---GCGCGCACCugU-UGAa -5'
6762 5' -55.6 NC_001875.2 + 118104 0.69 0.662478
Target:  5'- -cGCGAC-GCCGCGCGaguggUGGAgAGCa- -3'
miRNA:   3'- aaCGUUGuCGGCGCGC-----ACCUgUUGaa -5'
6762 5' -55.6 NC_001875.2 + 98484 0.69 0.666724
Target:  5'- uUUGCGACuGCCGCGUGcgugauuggcugccGGGCGACg- -3'
miRNA:   3'- -AACGUUGuCGGCGCGCa-------------CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 2661 0.69 0.673084
Target:  5'- cUUGCGGCgccGGCgGCGCcugGGGCAACUg -3'
miRNA:   3'- -AACGUUG---UCGgCGCGca-CCUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 85822 0.69 0.694178
Target:  5'- -cGCGGC-GCCaGCuGCGUGGGCGGCc- -3'
miRNA:   3'- aaCGUUGuCGG-CG-CGCACCUGUUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.