miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 5' -55.6 NC_001875.2 + 12294 0.67 0.81313
Target:  5'- gUGCAGCcggcacGCCGCcguguGCGUGGuCAACg- -3'
miRNA:   3'- aACGUUGu-----CGGCG-----CGCACCuGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 43310 0.68 0.73561
Target:  5'- -gGUAGCGGCgCGCGCGcGGGuCGGCg- -3'
miRNA:   3'- aaCGUUGUCG-GCGCGCaCCU-GUUGaa -5'
6762 5' -55.6 NC_001875.2 + 70185 0.68 0.755782
Target:  5'- -cGCAGCgAGCCGgGCG-GcGACGGCg- -3'
miRNA:   3'- aaCGUUG-UCGGCgCGCaC-CUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 113100 0.67 0.765696
Target:  5'- -cGCcuUAGCCGC-CGUGGugAGCg- -3'
miRNA:   3'- aaCGuuGUCGGCGcGCACCugUUGaa -5'
6762 5' -55.6 NC_001875.2 + 34640 0.67 0.785126
Target:  5'- gUGCAucauggaGGCCGC-CGUGGGCAAgUg -3'
miRNA:   3'- aACGUug-----UCGGCGcGCACCUGUUgAa -5'
6762 5' -55.6 NC_001875.2 + 59722 0.67 0.803034
Target:  5'- -aGCAGCGGCuCGCGCuggagcaGUGGuuCAGCa- -3'
miRNA:   3'- aaCGUUGUCG-GCGCG-------CACCu-GUUGaa -5'
6762 5' -55.6 NC_001875.2 + 44551 0.67 0.803961
Target:  5'- -cGUugGGCAGCCGCGCGUu-GCGACa- -3'
miRNA:   3'- aaCG--UUGUCGGCGCGCAccUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 68710 0.67 0.803961
Target:  5'- gUGCGcCGGCCGCGCGcccGGCcGCUa -3'
miRNA:   3'- aACGUuGUCGGCGCGCac-CUGuUGAa -5'
6762 5' -55.6 NC_001875.2 + 91253 0.67 0.803961
Target:  5'- gUGCGGCAaguugauuacGuaGCGCGcGGGCAACUUg -3'
miRNA:   3'- aACGUUGU----------CggCGCGCaCCUGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 43019 0.68 0.725372
Target:  5'- aUUGCGAguGCCGCGCGcc-GCGGCg- -3'
miRNA:   3'- -AACGUUguCGGCGCGCaccUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 7258 0.68 0.725372
Target:  5'- cUGCAGCGGCCugGCGCG-GGucgcCGACg- -3'
miRNA:   3'- aACGUUGUCGG--CGCGCaCCu---GUUGaa -5'
6762 5' -55.6 NC_001875.2 + 85822 0.69 0.694178
Target:  5'- -cGCGGC-GCCaGCuGCGUGGGCGGCc- -3'
miRNA:   3'- aaCGUUGuCGG-CG-CGCACCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 67150 0.72 0.505048
Target:  5'- cUGCGGCuGuCUGCGCG-GGACAGCg- -3'
miRNA:   3'- aACGUUGuC-GGCGCGCaCCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 91194 0.72 0.515176
Target:  5'- -cGCAACAGCCgGCGCGUGcGCGcccaguugaGCUUg -3'
miRNA:   3'- aaCGUUGUCGG-CGCGCACcUGU---------UGAA- -5'
6762 5' -55.6 NC_001875.2 + 47939 0.72 0.525385
Target:  5'- cUGCAACAGgCGUGCGcGGACAccgACa- -3'
miRNA:   3'- aACGUUGUCgGCGCGCaCCUGU---UGaa -5'
6762 5' -55.6 NC_001875.2 + 91444 0.71 0.546024
Target:  5'- -aGCugAGCGGCgGCGCGUGGGCGcGCa- -3'
miRNA:   3'- aaCG--UUGUCGgCGCGCACCUGU-UGaa -5'
6762 5' -55.6 NC_001875.2 + 95522 0.7 0.619881
Target:  5'- -cGCAACAGCCccaGCGCG-GGAUcGCa- -3'
miRNA:   3'- aaCGUUGUCGG---CGCGCaCCUGuUGaa -5'
6762 5' -55.6 NC_001875.2 + 47681 0.7 0.630537
Target:  5'- -cGCGGCGcGCCGCGCGUuucucaacgcgGGGCAAgUg -3'
miRNA:   3'- aaCGUUGU-CGGCGCGCA-----------CCUGUUgAa -5'
6762 5' -55.6 NC_001875.2 + 118104 0.69 0.662478
Target:  5'- -cGCGAC-GCCGCGCGaguggUGGAgAGCa- -3'
miRNA:   3'- aaCGUUGuCGGCGCGC-----ACCUgUUGaa -5'
6762 5' -55.6 NC_001875.2 + 2872 0.69 0.694178
Target:  5'- -aGCAGCGGUUgggGCGCGUGGgacGCAugUUg -3'
miRNA:   3'- aaCGUUGUCGG---CGCGCACC---UGUugAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.