miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 5' -55.6 NC_001875.2 + 95272 1.03 0.004407
Target:  5'- uUUGCAACAGCCGCGCGUGGACAACUUg -3'
miRNA:   3'- -AACGUUGUCGGCGCGCACCUGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 6917 0.68 0.73561
Target:  5'- gUGCGcuCGGCCGaggGCGUGGACcGCg- -3'
miRNA:   3'- aACGUu-GUCGGCg--CGCACCUGuUGaa -5'
6762 5' -55.6 NC_001875.2 + 89990 0.68 0.745749
Target:  5'- gUUGCAGCucGCCGcCGCGgcgcGGCAACUg -3'
miRNA:   3'- -AACGUUGu-CGGC-GCGCac--CUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 131257 0.66 0.864096
Target:  5'- gUGCGGCAGuuGUGCGacgcguUGaACGACUUg -3'
miRNA:   3'- aACGUUGUCggCGCGC------ACcUGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 101402 0.72 0.515176
Target:  5'- -cGCGcCAGCUGCGCGuUGGACGcuuuGCUg -3'
miRNA:   3'- aaCGUuGUCGGCGCGC-ACCUGU----UGAa -5'
6762 5' -55.6 NC_001875.2 + 108736 0.7 0.630537
Target:  5'- -cGCAGCGGCCuuugGCG-GGGCAGCUg -3'
miRNA:   3'- aaCGUUGUCGGcg--CGCaCCUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 7087 0.69 0.661416
Target:  5'- -gGCGGCAGCUacuacguGCGCGgcucGGACGGCg- -3'
miRNA:   3'- aaCGUUGUCGG-------CGCGCa---CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 120789 0.69 0.662478
Target:  5'- cUGCuGCAGUuugCGCGCGUGGugAaACUg -3'
miRNA:   3'- aACGuUGUCG---GCGCGCACCugU-UGAa -5'
6762 5' -55.6 NC_001875.2 + 54152 0.69 0.700466
Target:  5'- -gGCGGCAGUCGCGCaaauacgcgcucGGACAGCg- -3'
miRNA:   3'- aaCGUUGUCGGCGCGca----------CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 91884 0.68 0.73561
Target:  5'- cUGguGCGGCgGCGgGUcGGGCAACc- -3'
miRNA:   3'- aACguUGUCGgCGCgCA-CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 31047 0.68 0.715047
Target:  5'- -gGC-GCGGCCGUaCGUcGGACAACUg -3'
miRNA:   3'- aaCGuUGUCGGCGcGCA-CCUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 2661 0.69 0.673084
Target:  5'- cUUGCGGCgccGGCgGCGCcugGGGCAACUg -3'
miRNA:   3'- -AACGUUG---UCGgCGCGca-CCUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 29778 0.73 0.465452
Target:  5'- aUGU-ACGGCCGCGgGUGGACGGg-- -3'
miRNA:   3'- aACGuUGUCGGCGCgCACCUGUUgaa -5'
6762 5' -55.6 NC_001875.2 + 58757 0.68 0.715047
Target:  5'- -aGCGuACuGCuCGCGCGUGGcCAACg- -3'
miRNA:   3'- aaCGU-UGuCG-GCGCGCACCuGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 100875 0.73 0.475204
Target:  5'- -cGCGaggcGCAGCgCGCGCGUGGGCGcCa- -3'
miRNA:   3'- aaCGU----UGUCG-GCGCGCACCUGUuGaa -5'
6762 5' -55.6 NC_001875.2 + 98484 0.69 0.666724
Target:  5'- uUUGCGACuGCCGCGUGcgugauuggcugccGGGCGACg- -3'
miRNA:   3'- -AACGUUGuCGGCGCGCa-------------CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 73629 0.68 0.73561
Target:  5'- cUGCGGCGGCUGCGgCGgcugcUGcGGCGGCUg -3'
miRNA:   3'- aACGUUGUCGGCGC-GC-----AC-CUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 75589 0.68 0.74474
Target:  5'- -gGCAaaguacuGCAGCCGCGCGccGGCGugUa -3'
miRNA:   3'- aaCGU-------UGUCGGCGCGCacCUGUugAa -5'
6762 5' -55.6 NC_001875.2 + 21744 0.72 0.495007
Target:  5'- cUUGCucUGGCCGCGCGUGG-CGGCc- -3'
miRNA:   3'- -AACGuuGUCGGCGCGCACCuGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 121891 0.69 0.651845
Target:  5'- -gGCuauaAGCCG-GCGUGGGCAGCa- -3'
miRNA:   3'- aaCGuug-UCGGCgCGCACCUGUUGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.