miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 5' -55.6 NC_001875.2 + 2661 0.69 0.673084
Target:  5'- cUUGCGGCgccGGCgGCGCcugGGGCAACUg -3'
miRNA:   3'- -AACGUUG---UCGgCGCGca-CCUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 2872 0.69 0.694178
Target:  5'- -aGCAGCGGUUgggGCGCGUGGgacGCAugUUg -3'
miRNA:   3'- aaCGUUGUCGG---CGCGCACC---UGUugAA- -5'
6762 5' -55.6 NC_001875.2 + 3207 0.66 0.822121
Target:  5'- gUUGCGGCGGCgGUuggaugGCGUGGGCGc--- -3'
miRNA:   3'- -AACGUUGUCGgCG------CGCACCUGUugaa -5'
6762 5' -55.6 NC_001875.2 + 3850 0.66 0.830924
Target:  5'- -aGCAGCAGCagguuCGUGUGGcACGGCa- -3'
miRNA:   3'- aaCGUUGUCGgc---GCGCACC-UGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 6917 0.68 0.73561
Target:  5'- gUGCGcuCGGCCGaggGCGUGGACcGCg- -3'
miRNA:   3'- aACGUu-GUCGGCg--CGCACCUGuUGaa -5'
6762 5' -55.6 NC_001875.2 + 7087 0.69 0.661416
Target:  5'- -gGCGGCAGCUacuacguGCGCGgcucGGACGGCg- -3'
miRNA:   3'- aaCGUUGUCGG-------CGCGCa---CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 7258 0.68 0.725372
Target:  5'- cUGCAGCGGCCugGCGCG-GGucgcCGACg- -3'
miRNA:   3'- aACGUUGUCGG--CGCGCaCCu---GUUGaa -5'
6762 5' -55.6 NC_001875.2 + 11067 0.66 0.830924
Target:  5'- cUGCAGCAGUuuggcguggCGCGCGcccUGGACAcgGCc- -3'
miRNA:   3'- aACGUUGUCG---------GCGCGC---ACCUGU--UGaa -5'
6762 5' -55.6 NC_001875.2 + 12294 0.67 0.81313
Target:  5'- gUGCAGCcggcacGCCGCcguguGCGUGGuCAACg- -3'
miRNA:   3'- aACGUUGu-----CGGCG-----CGCACCuGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 18049 0.66 0.847934
Target:  5'- aUGCGACA--UGCGCGUggcGGACAACc- -3'
miRNA:   3'- aACGUUGUcgGCGCGCA---CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 21744 0.72 0.495007
Target:  5'- cUUGCucUGGCCGCGCGUGG-CGGCc- -3'
miRNA:   3'- -AACGuuGUCGGCGCGCACCuGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 29778 0.73 0.465452
Target:  5'- aUGU-ACGGCCGCGgGUGGACGGg-- -3'
miRNA:   3'- aACGuUGUCGGCGCgCACCUGUUgaa -5'
6762 5' -55.6 NC_001875.2 + 31047 0.68 0.715047
Target:  5'- -gGC-GCGGCCGUaCGUcGGACAACUg -3'
miRNA:   3'- aaCGuUGUCGGCGcGCA-CCUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 32571 0.67 0.785126
Target:  5'- cUGCAGCAguGCCGCGCGcaccuCGACUa -3'
miRNA:   3'- aACGUUGU--CGGCGCGCaccu-GUUGAa -5'
6762 5' -55.6 NC_001875.2 + 33479 0.67 0.81313
Target:  5'- -aGUGGCGcGCCGCGCGcUGGGguGCg- -3'
miRNA:   3'- aaCGUUGU-CGGCGCGC-ACCUguUGaa -5'
6762 5' -55.6 NC_001875.2 + 34640 0.67 0.785126
Target:  5'- gUGCAucauggaGGCCGC-CGUGGGCAAgUg -3'
miRNA:   3'- aACGUug-----UCGGCGcGCACCUGUUgAa -5'
6762 5' -55.6 NC_001875.2 + 35515 0.67 0.765696
Target:  5'- -gGCAacggGCGGCCGCGCGUuauauacGCGGCUUa -3'
miRNA:   3'- aaCGU----UGUCGGCGCGCAcc-----UGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 43019 0.68 0.725372
Target:  5'- aUUGCGAguGCCGCGCGcc-GCGGCg- -3'
miRNA:   3'- -AACGUUguCGGCGCGCaccUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 43310 0.68 0.73561
Target:  5'- -gGUAGCGGCgCGCGCGcGGGuCGGCg- -3'
miRNA:   3'- aaCGUUGUCG-GCGCGCaCCU-GUUGaa -5'
6762 5' -55.6 NC_001875.2 + 44551 0.67 0.803961
Target:  5'- -cGUugGGCAGCCGCGCGUu-GCGACa- -3'
miRNA:   3'- aaCG--UUGUCGGCGCGCAccUGUUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.