miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 5' -55.6 NC_001875.2 + 131257 0.66 0.864096
Target:  5'- gUGCGGCAGuuGUGCGacgcguUGaACGACUUg -3'
miRNA:   3'- aACGUUGUCggCGCGC------ACcUGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 128008 0.66 0.856125
Target:  5'- -gGCuGCGGCCGCgccgGCGUGcgccGACGACg- -3'
miRNA:   3'- aaCGuUGUCGGCG----CGCAC----CUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 121891 0.69 0.651845
Target:  5'- -gGCuauaAGCCG-GCGUGGGCAGCa- -3'
miRNA:   3'- aaCGuug-UCGGCgCGCACCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 120789 0.69 0.662478
Target:  5'- cUGCuGCAGUuugCGCGCGUGGugAaACUg -3'
miRNA:   3'- aACGuUGUCG---GCGCGCACCugU-UGAa -5'
6762 5' -55.6 NC_001875.2 + 119423 0.66 0.839531
Target:  5'- -cGCAACGGCCugcuugGCGCGcGGcaaACAGCg- -3'
miRNA:   3'- aaCGUUGUCGG------CGCGCaCC---UGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 118104 0.69 0.662478
Target:  5'- -cGCGAC-GCCGCGCGaguggUGGAgAGCa- -3'
miRNA:   3'- aaCGUUGuCGGCGCGC-----ACCUgUUGaa -5'
6762 5' -55.6 NC_001875.2 + 114024 0.66 0.847103
Target:  5'- -cGCAugGCGGCCGCGCGguccagaUGG-UAGCa- -3'
miRNA:   3'- aaCGU--UGUCGGCGCGC-------ACCuGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 113100 0.67 0.765696
Target:  5'- -cGCcuUAGCCGC-CGUGGugAGCg- -3'
miRNA:   3'- aaCGuuGUCGGCGcGCACCugUUGaa -5'
6762 5' -55.6 NC_001875.2 + 111038 0.66 0.864096
Target:  5'- cUGCGACGacGCCcgcgcacuGCGCGUcGACGGCUUc -3'
miRNA:   3'- aACGUUGU--CGG--------CGCGCAcCUGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 110580 0.66 0.830924
Target:  5'- -cGUAGCcgcGCCGCGCGcgcgccUGGAcCAGCUUc -3'
miRNA:   3'- aaCGUUGu--CGGCGCGC------ACCU-GUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 108736 0.7 0.630537
Target:  5'- -cGCAGCGGCCuuugGCG-GGGCAGCUg -3'
miRNA:   3'- aaCGUUGUCGGcg--CGCaCCUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 104950 0.66 0.830924
Target:  5'- gUUGUAGCAGuuGCucGUGUGcGGCGGCg- -3'
miRNA:   3'- -AACGUUGUCggCG--CGCAC-CUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 104148 0.68 0.745749
Target:  5'- gUGCGgcucaaACGGCgGCGCGaUGGcgACAACUUg -3'
miRNA:   3'- aACGU------UGUCGgCGCGC-ACC--UGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 101993 0.67 0.765696
Target:  5'- gUGCAuuGCGGCgUGCGCGgcggcGGugGACUg -3'
miRNA:   3'- aACGU--UGUCG-GCGCGCa----CCugUUGAa -5'
6762 5' -55.6 NC_001875.2 + 101402 0.72 0.515176
Target:  5'- -cGCGcCAGCUGCGCGuUGGACGcuuuGCUg -3'
miRNA:   3'- aaCGUuGUCGGCGCGC-ACCUGU----UGAa -5'
6762 5' -55.6 NC_001875.2 + 100875 0.73 0.475204
Target:  5'- -cGCGaggcGCAGCgCGCGCGUGGGCGcCa- -3'
miRNA:   3'- aaCGU----UGUCG-GCGCGCACCUGUuGaa -5'
6762 5' -55.6 NC_001875.2 + 99913 0.67 0.77548
Target:  5'- -cGCAACgagcgGGCCGCGCGcgcGGuGCAGCg- -3'
miRNA:   3'- aaCGUUG-----UCGGCGCGCa--CC-UGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 99058 0.67 0.81313
Target:  5'- -cGCGGCGcccgcccacGCCGCGCGaGGACGcGCUc -3'
miRNA:   3'- aaCGUUGU---------CGGCGCGCaCCUGU-UGAa -5'
6762 5' -55.6 NC_001875.2 + 98926 0.67 0.794623
Target:  5'- -gGCGcCGGuuGCGCGUGcGCGACg- -3'
miRNA:   3'- aaCGUuGUCggCGCGCACcUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 98484 0.69 0.666724
Target:  5'- uUUGCGACuGCCGCGUGcgugauuggcugccGGGCGACg- -3'
miRNA:   3'- -AACGUUGuCGGCGCGCa-------------CCUGUUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.