miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 5' -55.6 NC_001875.2 + 47681 0.7 0.630537
Target:  5'- -cGCGGCGcGCCGCGCGUuucucaacgcgGGGCAAgUg -3'
miRNA:   3'- aaCGUUGU-CGGCGCGCA-----------CCUGUUgAa -5'
6762 5' -55.6 NC_001875.2 + 47939 0.72 0.525385
Target:  5'- cUGCAACAGgCGUGCGcGGACAccgACa- -3'
miRNA:   3'- aACGUUGUCgGCGCGCaCCUGU---UGaa -5'
6762 5' -55.6 NC_001875.2 + 50480 0.66 0.830924
Target:  5'- -aGCGacGCGGCCgGCGCGUGcGcGCGGCa- -3'
miRNA:   3'- aaCGU--UGUCGG-CGCGCAC-C-UGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 51964 0.72 0.495007
Target:  5'- gUGCcGCAcGCgCGCGCGUGGACcACg- -3'
miRNA:   3'- aACGuUGU-CG-GCGCGCACCUGuUGaa -5'
6762 5' -55.6 NC_001875.2 + 54152 0.69 0.700466
Target:  5'- -gGCGGCAGUCGCGCaaauacgcgcucGGACAGCg- -3'
miRNA:   3'- aaCGUUGUCGGCGCGca----------CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 58757 0.68 0.715047
Target:  5'- -aGCGuACuGCuCGCGCGUGGcCAACg- -3'
miRNA:   3'- aaCGU-UGuCG-GCGCGCACCuGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 59722 0.67 0.803034
Target:  5'- -aGCAGCGGCuCGCGCuggagcaGUGGuuCAGCa- -3'
miRNA:   3'- aaCGUUGUCG-GCGCG-------CACCu-GUUGaa -5'
6762 5' -55.6 NC_001875.2 + 62208 0.66 0.847934
Target:  5'- aUGCAuuggauGCCGCGCGacgaUGGACAGg-- -3'
miRNA:   3'- aACGUugu---CGGCGCGC----ACCUGUUgaa -5'
6762 5' -55.6 NC_001875.2 + 66304 0.66 0.847934
Target:  5'- aUGC-GCGGCCgGCgaguugaugGCGUGGGCGGCc- -3'
miRNA:   3'- aACGuUGUCGG-CG---------CGCACCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 66949 0.69 0.704646
Target:  5'- -cGCGACAGCUGaGCGUcGACGACc- -3'
miRNA:   3'- aaCGUUGUCGGCgCGCAcCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 67150 0.72 0.505048
Target:  5'- cUGCGGCuGuCUGCGCG-GGACAGCg- -3'
miRNA:   3'- aACGUUGuC-GGCGCGCaCCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 68566 0.66 0.847934
Target:  5'- -gGCGGCGGUCGCgcaccGCGUGGcGCcGCUg -3'
miRNA:   3'- aaCGUUGUCGGCG-----CGCACC-UGuUGAa -5'
6762 5' -55.6 NC_001875.2 + 68710 0.67 0.803961
Target:  5'- gUGCGcCGGCCGCGCGcccGGCcGCUa -3'
miRNA:   3'- aACGUuGUCGGCGCGCac-CUGuUGAa -5'
6762 5' -55.6 NC_001875.2 + 70185 0.68 0.755782
Target:  5'- -cGCAGCgAGCCGgGCG-GcGACGGCg- -3'
miRNA:   3'- aaCGUUG-UCGGCgCGCaC-CUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 73629 0.68 0.73561
Target:  5'- cUGCGGCGGCUGCGgCGgcugcUGcGGCGGCUg -3'
miRNA:   3'- aACGUUGUCGGCGC-GC-----AC-CUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 73692 0.68 0.755782
Target:  5'- cUGCGGCGGCUGCuGCGgcGGcuGCGGCUg -3'
miRNA:   3'- aACGUUGUCGGCG-CGCa-CC--UGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 75589 0.68 0.74474
Target:  5'- -gGCAaaguacuGCAGCCGCGCGccGGCGugUa -3'
miRNA:   3'- aaCGU-------UGUCGGCGCGCacCUGUugAa -5'
6762 5' -55.6 NC_001875.2 + 78408 0.66 0.830924
Target:  5'- cUGCAcgcGCuGGCCguguGCGCGcUGGGCAACa- -3'
miRNA:   3'- aACGU---UG-UCGG----CGCGC-ACCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 85822 0.69 0.694178
Target:  5'- -cGCGGC-GCCaGCuGCGUGGGCGGCc- -3'
miRNA:   3'- aaCGUUGuCGG-CG-CGCACCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 89990 0.68 0.745749
Target:  5'- gUUGCAGCucGCCGcCGCGgcgcGGCAACUg -3'
miRNA:   3'- -AACGUUGu-CGGC-GCGCac--CUGUUGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.