miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6764 3' -55.3 NC_001875.2 + 37079 0.67 0.852925
Target:  5'- cUGuGUUuGGCGGaCGACAccgccgcguggguguGCGGGCGCGg -3'
miRNA:   3'- uAC-CAAcUCGUC-GCUGU---------------UGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 6675 0.67 0.849672
Target:  5'- -cGGUaaaUGAaCuuGGCGACGACGGcGCACGc -3'
miRNA:   3'- uaCCA---ACUcG--UCGCUGUUGCC-CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 100781 0.67 0.849672
Target:  5'- -aGGUUGAGCGGCacaguuuccGACGuACGGcCGCGc -3'
miRNA:   3'- uaCCAACUCGUCG---------CUGU-UGCCcGUGU- -5'
6764 3' -55.3 NC_001875.2 + 86357 0.67 0.840553
Target:  5'- gGUGGUguuuGGCAccgcgcuagacgcGCGGCuGCGGGCGCc -3'
miRNA:   3'- -UACCAac--UCGU-------------CGCUGuUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 1 0.67 0.832911
Target:  5'- cGUGGgc--GCGGCGACAGgGGgguGCACAa -3'
miRNA:   3'- -UACCaacuCGUCGCUGUUgCC---CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 118198 0.67 0.832911
Target:  5'- uUGuGUUGAGCGGCGGC-GC-GGCAa- -3'
miRNA:   3'- uAC-CAACUCGUCGCUGuUGcCCGUgu -5'
6764 3' -55.3 NC_001875.2 + 23236 0.67 0.832911
Target:  5'- cGUGGUU-AGCAGCuGgucggagaacaGCGACGGGCAg- -3'
miRNA:   3'- -UACCAAcUCGUCG-C-----------UGUUGCCCGUgu -5'
6764 3' -55.3 NC_001875.2 + 29791 0.67 0.827728
Target:  5'- gGUGGacGGGCgugucaggcuacgccGGCGACAAauauuucuCGGGCACGg -3'
miRNA:   3'- -UACCaaCUCG---------------UCGCUGUU--------GCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 106627 0.67 0.815373
Target:  5'- cUGGUUuGGCGGCaaaacggugucGACGGCGGuGUACAu -3'
miRNA:   3'- uACCAAcUCGUCG-----------CUGUUGCC-CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 108747 0.67 0.815373
Target:  5'- uUGGcgGGGCAGCuGC-ACGcGGCGCGg -3'
miRNA:   3'- uACCaaCUCGUCGcUGuUGC-CCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 111779 0.67 0.815373
Target:  5'- cUGGUgucGCuGGUGACGGCGGuGCACGc -3'
miRNA:   3'- uACCAacuCG-UCGCUGUUGCC-CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 104949 0.67 0.815373
Target:  5'- --uGUUGuAGCAguugcucguguGCGGCGGCGGGCugGu -3'
miRNA:   3'- uacCAAC-UCGU-----------CGCUGUUGCCCGugU- -5'
6764 3' -55.3 NC_001875.2 + 102410 0.67 0.815373
Target:  5'- -gGGUucuacuacuUGGGCcGCGGCGACGaGGUGCGc -3'
miRNA:   3'- uaCCA---------ACUCGuCGCUGUUGC-CCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 59574 0.67 0.809971
Target:  5'- gAUGuGUUGcgcuGCAGCGugGccgacgugcgcgagcACGGGCGCu -3'
miRNA:   3'- -UAC-CAACu---CGUCGCugU---------------UGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 68549 0.68 0.797127
Target:  5'- -cGGUUugccgccGCGGCGGCGGCGGucGCGCAc -3'
miRNA:   3'- uaCCAAcu-----CGUCGCUGUUGCC--CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 65777 0.68 0.797127
Target:  5'- cUGGgcGAGCAcGCGcGCGGCGucGGCGCGc -3'
miRNA:   3'- uACCaaCUCGU-CGC-UGUUGC--CCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 94315 0.68 0.787762
Target:  5'- -aGGUUGGGC-GCGuccaGGCaGGGCGCGu -3'
miRNA:   3'- uaCCAACUCGuCGCug--UUG-CCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 85290 0.68 0.787762
Target:  5'- -cGGuUUGcGCgGGCGGC-GCGGGCGCGg -3'
miRNA:   3'- uaCC-AACuCG-UCGCUGuUGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 131741 0.68 0.778247
Target:  5'- aAUGGUgcauUGGGcCGGCGGCGgauCGGGCGg- -3'
miRNA:   3'- -UACCA----ACUC-GUCGCUGUu--GCCCGUgu -5'
6764 3' -55.3 NC_001875.2 + 32784 0.68 0.778247
Target:  5'- -----cGcGCGGCGugGGCGGGCGCc -3'
miRNA:   3'- uaccaaCuCGUCGCugUUGCCCGUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.