miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6764 3' -55.3 NC_001875.2 + 73785 0.68 0.768593
Target:  5'- -gGGUUGuGGCGGCGGCGgcuggaACGGcaGCGCGc -3'
miRNA:   3'- uaCCAAC-UCGUCGCUGU------UGCC--CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 67930 0.68 0.768593
Target:  5'- -gGGUucaUGAuGCGGCGGCGccACGGcGCGCu -3'
miRNA:   3'- uaCCA---ACU-CGUCGCUGU--UGCC-CGUGu -5'
6764 3' -55.3 NC_001875.2 + 1031 0.68 0.75881
Target:  5'- cGUGGcgGGGCccgaGGCGcACAGCguuGGGCGCAa -3'
miRNA:   3'- -UACCaaCUCG----UCGC-UGUUG---CCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 38686 0.68 0.75881
Target:  5'- -----aGuGCGGCGGCGugGGGCugAa -3'
miRNA:   3'- uaccaaCuCGUCGCUGUugCCCGugU- -5'
6764 3' -55.3 NC_001875.2 + 109831 0.69 0.747911
Target:  5'- uGUGGaUUGGGCAGUGcCGGCGGauuugcuGCGCGc -3'
miRNA:   3'- -UACC-AACUCGUCGCuGUUGCC-------CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 70177 0.69 0.744916
Target:  5'- -gGGUUuggcgcagcgagccGGGCGGCGACGGCgaccacuGGGCGCc -3'
miRNA:   3'- uaCCAA--------------CUCGUCGCUGUUG-------CCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 69549 0.69 0.735873
Target:  5'- cGUGGUgggucuugcgacuaUGAugGCGGaccuGACAACGGGCGCu -3'
miRNA:   3'- -UACCA--------------ACU--CGUCg---CUGUUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 93746 0.69 0.732841
Target:  5'- -cGGUUGAGCAuGCGccACAcacccacguugucgaACGGGCgGCAg -3'
miRNA:   3'- uaCCAACUCGU-CGC--UGU---------------UGCCCG-UGU- -5'
6764 3' -55.3 NC_001875.2 + 121428 0.69 0.728786
Target:  5'- --uGUUGGGUAGUG-CAGCGGGUGCc -3'
miRNA:   3'- uacCAACUCGUCGCuGUUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 91446 0.69 0.708308
Target:  5'- ----cUGAGCGGCGGCGcguGGGCGCGc -3'
miRNA:   3'- uaccaACUCGUCGCUGUug-CCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 47040 0.7 0.687555
Target:  5'- aGUGG-UGGGCGugccCGACAACGGGCugcuCAa -3'
miRNA:   3'- -UACCaACUCGUc---GCUGUUGCCCGu---GU- -5'
6764 3' -55.3 NC_001875.2 + 84439 0.7 0.677101
Target:  5'- -cGGaucggGAGCGGCGGCGGCGGuagaccaugauGCGCGu -3'
miRNA:   3'- uaCCaa---CUCGUCGCUGUUGCC-----------CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 767 0.7 0.666607
Target:  5'- cAUGG---GGCAGCuGACGGCGGcGCGCGg -3'
miRNA:   3'- -UACCaacUCGUCG-CUGUUGCC-CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 113327 0.7 0.666607
Target:  5'- cAUGG-UGGGCuuuucguGCGGCGgguCGGGCGCGg -3'
miRNA:   3'- -UACCaACUCGu------CGCUGUu--GCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 117321 0.7 0.656083
Target:  5'- --uGUUGAGCGGCuuGACAcgGCGcGGCGCGg -3'
miRNA:   3'- uacCAACUCGUCG--CUGU--UGC-CCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 23164 0.7 0.656083
Target:  5'- -cGGcugcGGGCacGGCGGCuGCGGGCACGg -3'
miRNA:   3'- uaCCaa--CUCG--UCGCUGuUGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 3044 0.7 0.64554
Target:  5'- --cGUUGGGCAGCGcguaagaggcgcGCAGCGGcGCGCc -3'
miRNA:   3'- uacCAACUCGUCGC------------UGUUGCC-CGUGu -5'
6764 3' -55.3 NC_001875.2 + 35488 0.72 0.551148
Target:  5'- uUGGccgUGAGCGGCaugacaacugccGGCAACGGGCGg- -3'
miRNA:   3'- uACCa--ACUCGUCG------------CUGUUGCCCGUgu -5'
6764 3' -55.3 NC_001875.2 + 88133 0.72 0.529618
Target:  5'- -cGGUgcUGAGCGGCGcCAAaauugugUGGGCGCAc -3'
miRNA:   3'- uaCCA--ACUCGUCGCuGUU-------GCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 101084 0.73 0.510408
Target:  5'- cGUGGgcgGAGCuauacAGCGACAGCGuGCACGu -3'
miRNA:   3'- -UACCaa-CUCG-----UCGCUGUUGCcCGUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.