Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6764 | 5' | -53.2 | NC_001875.2 | + | 99757 | 0.78 | 0.41884 |
Target: 5'- -cUGUGUGCGUUuggCGCCGUUGUUGcGg -3' miRNA: 3'- gaACACGCGCAGua-GCGGCAGCAAC-C- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 73056 | 0.67 | 0.943508 |
Target: 5'- --cGUuCGCGUCGaaaaagcgcaCGUCGUCGUUGGc -3' miRNA: 3'- gaaCAcGCGCAGUa---------GCGGCAGCAACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 37982 | 0.67 | 0.947973 |
Target: 5'- ---cUGCGCGcUCAgCGCCGacaacCGUUGGu -3' miRNA: 3'- gaacACGCGC-AGUaGCGGCa----GCAACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 78717 | 0.67 | 0.952198 |
Target: 5'- -gUGUGCGUGUCGUCGUCaaacUUGUg-- -3' miRNA: 3'- gaACACGCGCAGUAGCGGc---AGCAacc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 102412 | 0.67 | 0.952198 |
Target: 5'- --cGUGUcgGCGUCGcgcUCGCCGUUgccgagcgccggGUUGGc -3' miRNA: 3'- gaaCACG--CGCAGU---AGCGGCAG------------CAACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 73375 | 0.66 | 0.96347 |
Target: 5'- --gGUGCGCuuguacugguuGUCGUCuUCGUCGUaaaUGGg -3' miRNA: 3'- gaaCACGCG-----------CAGUAGcGGCAGCA---ACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 102800 | 0.66 | 0.96347 |
Target: 5'- uCUUGaGCGCGUCGuuuagcccgUCGCCGcCGcaaaucgGGa -3' miRNA: 3'- -GAACaCGCGCAGU---------AGCGGCaGCaa-----CC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 18559 | 0.66 | 0.969863 |
Target: 5'- --cGUGgGUGUCuugagCGCgcuuugCGUCGUUGGc -3' miRNA: 3'- gaaCACgCGCAGua---GCG------GCAGCAACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 43650 | 0.66 | 0.971039 |
Target: 5'- gUUGUGCGCGccguuggugcacgccUCGaccaugcaccguUUGCCGUCGUg-- -3' miRNA: 3'- gAACACGCGC---------------AGU------------AGCGGCAGCAacc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 50003 | 0.67 | 0.9388 |
Target: 5'- gCUUGUcgcgguuggggcGCGCGUgGUCGCCGggCGgcGa -3' miRNA: 3'- -GAACA------------CGCGCAgUAGCGGCa-GCaaCc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 36809 | 0.67 | 0.9388 |
Target: 5'- --gGUGCGCGUUAcgCGCCGcggcaGUUGc -3' miRNA: 3'- gaaCACGCGCAGUa-GCGGCag---CAACc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 66771 | 0.68 | 0.933848 |
Target: 5'- cCUUGcccaGCGUGUUggCGCCGcCGUUGu -3' miRNA: 3'- -GAACa---CGCGCAGuaGCGGCaGCAACc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 60651 | 0.77 | 0.503337 |
Target: 5'- aCUUGUGCcauuuuGUGUCGUCGUCGUCGUc-- -3' miRNA: 3'- -GAACACG------CGCAGUAGCGGCAGCAacc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 46445 | 0.74 | 0.615148 |
Target: 5'- uUUGUGUGCGaCAUaaaCGCCGUUGUggUGGa -3' miRNA: 3'- gAACACGCGCaGUA---GCGGCAGCA--ACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 65769 | 0.72 | 0.748078 |
Target: 5'- --cGUGCGCGgcgggcggCGgcgCGUCGUCGUUGa -3' miRNA: 3'- gaaCACGCGCa-------GUa--GCGGCAGCAACc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 60488 | 0.72 | 0.748078 |
Target: 5'- aUUGUGCuaGCGUCggCGuuGUCGgcGGu -3' miRNA: 3'- gAACACG--CGCAGuaGCggCAGCaaCC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 58531 | 0.71 | 0.813641 |
Target: 5'- -cUGUGuCGCGUCGUCGCgG-CGUUu- -3' miRNA: 3'- gaACAC-GCGCAGUAGCGgCaGCAAcc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 8609 | 0.71 | 0.8224 |
Target: 5'- aCUUGUGCGCGcuaauaaacUUGUCGCUGUuggUGUUGa -3' miRNA: 3'- -GAACACGCGC---------AGUAGCGGCA---GCAACc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 53911 | 0.7 | 0.86336 |
Target: 5'- aUUGUggGCGCGcCGUUGCgGgcgCGUUGGc -3' miRNA: 3'- gAACA--CGCGCaGUAGCGgCa--GCAACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 95308 | 0.69 | 0.885416 |
Target: 5'- --gGUGCGCGcCAgCGCCGUU--UGGc -3' miRNA: 3'- gaaCACGCGCaGUaGCGGCAGcaACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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