miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6764 5' -53.2 NC_001875.2 + 3014 0.7 0.842677
Target:  5'- --aGUGCGCG---UCGCCGUgcaaguuguacacgcCGUUGGg -3'
miRNA:   3'- gaaCACGCGCaguAGCGGCA---------------GCAACC- -5'
6764 5' -53.2 NC_001875.2 + 3228 0.71 0.813641
Target:  5'- --cGUGgGCG-CGUUGgCGUUGUUGGa -3'
miRNA:   3'- gaaCACgCGCaGUAGCgGCAGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 8070 0.68 0.917513
Target:  5'- uCUUGaGCGCGUCcgCGuuGUUGUc-- -3'
miRNA:   3'- -GAACaCGCGCAGuaGCggCAGCAacc -5'
6764 5' -53.2 NC_001875.2 + 8609 0.71 0.8224
Target:  5'- aCUUGUGCGCGcuaauaaacUUGUCGCUGUuggUGUUGa -3'
miRNA:   3'- -GAACACGCGC---------AGUAGCGGCA---GCAACc -5'
6764 5' -53.2 NC_001875.2 + 13806 0.72 0.767478
Target:  5'- -gUG-GCGCGgCGUUGCCGUCGcacUGGu -3'
miRNA:   3'- gaACaCGCGCaGUAGCGGCAGCa--ACC- -5'
6764 5' -53.2 NC_001875.2 + 16405 0.71 0.776996
Target:  5'- --gGUGCgGUGuUCGUCGCCGccaaaccguUCGUUGGc -3'
miRNA:   3'- gaaCACG-CGC-AGUAGCGGC---------AGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 18285 0.77 0.464775
Target:  5'- --cGUGCGCGaCcgCGCCGUUGaUUGGg -3'
miRNA:   3'- gaaCACGCGCaGuaGCGGCAGC-AACC- -5'
6764 5' -53.2 NC_001875.2 + 18559 0.66 0.969863
Target:  5'- --cGUGgGUGUCuugagCGCgcuuugCGUCGUUGGc -3'
miRNA:   3'- gaaCACgCGCAGua---GCG------GCAGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 22503 0.67 0.956186
Target:  5'- cCUUGUuCGCGUCGUugacgcguuUGCCGUauUUGGu -3'
miRNA:   3'- -GAACAcGCGCAGUA---------GCGGCAgcAACC- -5'
6764 5' -53.2 NC_001875.2 + 24342 0.68 0.907897
Target:  5'- --cGUGCcgcgGCGUucagcuccagauaccCGUCGUgGUCGUUGGg -3'
miRNA:   3'- gaaCACG----CGCA---------------GUAGCGgCAGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 27242 0.71 0.786381
Target:  5'- aUUGUGgGCGUCAUC-CUGUUuUUGGu -3'
miRNA:   3'- gAACACgCGCAGUAGcGGCAGcAACC- -5'
6764 5' -53.2 NC_001875.2 + 32930 0.66 0.969863
Target:  5'- aCUUGgugaGCGCGUCAguuugcgCGCCGcUCGc--- -3'
miRNA:   3'- -GAACa---CGCGCAGUa------GCGGC-AGCaacc -5'
6764 5' -53.2 NC_001875.2 + 36809 0.67 0.9388
Target:  5'- --gGUGCGCGUUAcgCGCCGcggcaGUUGc -3'
miRNA:   3'- gaaCACGCGCAGUa-GCGGCag---CAACc -5'
6764 5' -53.2 NC_001875.2 + 37982 0.67 0.947973
Target:  5'- ---cUGCGCGcUCAgCGCCGacaacCGUUGGu -3'
miRNA:   3'- gaacACGCGC-AGUaGCGGCa----GCAACC- -5'
6764 5' -53.2 NC_001875.2 + 43650 0.66 0.971039
Target:  5'- gUUGUGCGCGccguuggugcacgccUCGaccaugcaccguUUGCCGUCGUg-- -3'
miRNA:   3'- gAACACGCGC---------------AGU------------AGCGGCAGCAacc -5'
6764 5' -53.2 NC_001875.2 + 46445 0.74 0.615148
Target:  5'- uUUGUGUGCGaCAUaaaCGCCGUUGUggUGGa -3'
miRNA:   3'- gAACACGCGCaGUA---GCGGCAGCA--ACC- -5'
6764 5' -53.2 NC_001875.2 + 50003 0.67 0.9388
Target:  5'- gCUUGUcgcgguuggggcGCGCGUgGUCGCCGggCGgcGa -3'
miRNA:   3'- -GAACA------------CGCGCAgUAGCGGCa-GCaaCc -5'
6764 5' -53.2 NC_001875.2 + 53911 0.7 0.86336
Target:  5'- aUUGUggGCGCGcCGUUGCgGgcgCGUUGGc -3'
miRNA:   3'- gAACA--CGCGCaGUAGCGgCa--GCAACC- -5'
6764 5' -53.2 NC_001875.2 + 54331 0.72 0.738216
Target:  5'- --cGUGCGCGUgA-CGgucaCGUCGUUGGa -3'
miRNA:   3'- gaaCACGCGCAgUaGCg---GCAGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 58531 0.71 0.813641
Target:  5'- -cUGUGuCGCGUCGUCGCgG-CGUUu- -3'
miRNA:   3'- gaACAC-GCGCAGUAGCGgCaGCAAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.