miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6764 5' -53.2 NC_001875.2 + 60488 0.72 0.748078
Target:  5'- aUUGUGCuaGCGUCggCGuuGUCGgcGGu -3'
miRNA:   3'- gAACACG--CGCAGuaGCggCAGCaaCC- -5'
6764 5' -53.2 NC_001875.2 + 60651 0.77 0.503337
Target:  5'- aCUUGUGCcauuuuGUGUCGUCGUCGUCGUc-- -3'
miRNA:   3'- -GAACACG------CGCAGUAGCGGCAGCAacc -5'
6764 5' -53.2 NC_001875.2 + 62575 0.66 0.966775
Target:  5'- -gUGUGCGUGUgCAUuaaccggcccgUGCCGUCGg--- -3'
miRNA:   3'- gaACACGCGCA-GUA-----------GCGGCAGCaacc -5'
6764 5' -53.2 NC_001875.2 + 63707 0.7 0.86336
Target:  5'- --gGUGCGCGUgAUUGCC-UCGccGGa -3'
miRNA:   3'- gaaCACGCGCAgUAGCGGcAGCaaCC- -5'
6764 5' -53.2 NC_001875.2 + 64382 0.66 0.96347
Target:  5'- -gUGccgGCGCGUCAgcuuucagaCGCUGUUGcUGGg -3'
miRNA:   3'- gaACa--CGCGCAGUa--------GCGGCAGCaACC- -5'
6764 5' -53.2 NC_001875.2 + 65769 0.72 0.748078
Target:  5'- --cGUGCGCGgcgggcggCGgcgCGUCGUCGUUGa -3'
miRNA:   3'- gaaCACGCGCa-------GUa--GCGGCAGCAACc -5'
6764 5' -53.2 NC_001875.2 + 66771 0.68 0.933848
Target:  5'- cCUUGcccaGCGUGUUggCGCCGcCGUUGu -3'
miRNA:   3'- -GAACa---CGCGCAGuaGCGGCaGCAACc -5'
6764 5' -53.2 NC_001875.2 + 72730 0.66 0.959942
Target:  5'- ---uUGCGCGUCGgccagcgaCGCCGUCagccUGGa -3'
miRNA:   3'- gaacACGCGCAGUa-------GCGGCAGca--ACC- -5'
6764 5' -53.2 NC_001875.2 + 73056 0.67 0.943508
Target:  5'- --cGUuCGCGUCGaaaaagcgcaCGUCGUCGUUGGc -3'
miRNA:   3'- gaaCAcGCGCAGUa---------GCGGCAGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 73375 0.66 0.96347
Target:  5'- --gGUGCGCuuguacugguuGUCGUCuUCGUCGUaaaUGGg -3'
miRNA:   3'- gaaCACGCG-----------CAGUAGcGGCAGCA---ACC- -5'
6764 5' -53.2 NC_001875.2 + 76519 0.68 0.905396
Target:  5'- ----gGCGCGUCAUCaCCGUCGc--- -3'
miRNA:   3'- gaacaCGCGCAGUAGcGGCAGCaacc -5'
6764 5' -53.2 NC_001875.2 + 78717 0.67 0.952198
Target:  5'- -gUGUGCGUGUCGUCGUCaaacUUGUg-- -3'
miRNA:   3'- gaACACGCGCAGUAGCGGc---AGCAacc -5'
6764 5' -53.2 NC_001875.2 + 90994 0.71 0.8224
Target:  5'- --gGUGCGCGUCuuggcgagCGCCGUC-UUGc -3'
miRNA:   3'- gaaCACGCGCAGua------GCGGCAGcAACc -5'
6764 5' -53.2 NC_001875.2 + 94163 1.1 0.004704
Target:  5'- uCUUGUGCGCGUCAUCGCCGUCGUUGGc -3'
miRNA:   3'- -GAACACGCGCAGUAGCGGCAGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 94336 0.67 0.947973
Target:  5'- ----gGCGCGUCGUCcgcaCCGUCGccGGc -3'
miRNA:   3'- gaacaCGCGCAGUAGc---GGCAGCaaCC- -5'
6764 5' -53.2 NC_001875.2 + 95308 0.69 0.885416
Target:  5'- --gGUGCGCGcCAgCGCCGUU--UGGc -3'
miRNA:   3'- gaaCACGCGCaGUaGCGGCAGcaACC- -5'
6764 5' -53.2 NC_001875.2 + 96205 0.67 0.943508
Target:  5'- aCUUGcgcUGCGCcagauaGUCcgCGUCGgCGUUGGg -3'
miRNA:   3'- -GAAC---ACGCG------CAGuaGCGGCaGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 98880 0.68 0.917513
Target:  5'- -aUGUGCGCGgg--CGCCGUUucgGGa -3'
miRNA:   3'- gaACACGCGCaguaGCGGCAGcaaCC- -5'
6764 5' -53.2 NC_001875.2 + 99589 0.66 0.97274
Target:  5'- --aGUGCGgGUUGUcgCGCCGguaugucugcgCGUUGGc -3'
miRNA:   3'- gaaCACGCgCAGUA--GCGGCa----------GCAACC- -5'
6764 5' -53.2 NC_001875.2 + 99693 0.75 0.573809
Target:  5'- ----aGCGCGUCuUCGCCGcCGUUGa -3'
miRNA:   3'- gaacaCGCGCAGuAGCGGCaGCAACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.