miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6764 5' -53.2 NC_001875.2 + 131772 0.68 0.905396
Target:  5'- ----gGCGCGUCAUUGgUGUCGUUc- -3'
miRNA:   3'- gaacaCGCGCAGUAGCgGCAGCAAcc -5'
6764 5' -53.2 NC_001875.2 + 125160 0.66 0.96347
Target:  5'- --cGUGCGcCGUCGUCGCCaa-GUUc- -3'
miRNA:   3'- gaaCACGC-GCAGUAGCGGcagCAAcc -5'
6764 5' -53.2 NC_001875.2 + 124413 0.67 0.956186
Target:  5'- ----gGCGCGcaGUUGCCcucGUCGUUGGg -3'
miRNA:   3'- gaacaCGCGCagUAGCGG---CAGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 114580 0.7 0.839374
Target:  5'- aUUGUGCGCGUCGgcaaacgCGgCGUCuuGUUGc -3'
miRNA:   3'- gAACACGCGCAGUa------GCgGCAG--CAACc -5'
6764 5' -53.2 NC_001875.2 + 111124 0.68 0.911577
Target:  5'- ---uUGCGUGUUGUCGCuaaCGUaCGUUGGc -3'
miRNA:   3'- gaacACGCGCAGUAGCG---GCA-GCAACC- -5'
6764 5' -53.2 NC_001875.2 + 102800 0.66 0.96347
Target:  5'- uCUUGaGCGCGUCGuuuagcccgUCGCCGcCGcaaaucgGGa -3'
miRNA:   3'- -GAACaCGCGCAGU---------AGCGGCaGCaa-----CC- -5'
6764 5' -53.2 NC_001875.2 + 102412 0.67 0.952198
Target:  5'- --cGUGUcgGCGUCGcgcUCGCCGUUgccgagcgccggGUUGGc -3'
miRNA:   3'- gaaCACG--CGCAGU---AGCGGCAG------------CAACC- -5'
6764 5' -53.2 NC_001875.2 + 99757 0.78 0.41884
Target:  5'- -cUGUGUGCGUUuggCGCCGUUGUUGcGg -3'
miRNA:   3'- gaACACGCGCAGua-GCGGCAGCAAC-C- -5'
6764 5' -53.2 NC_001875.2 + 99693 0.75 0.573809
Target:  5'- ----aGCGCGUCuUCGCCGcCGUUGa -3'
miRNA:   3'- gaacaCGCGCAGuAGCGGCaGCAACc -5'
6764 5' -53.2 NC_001875.2 + 99589 0.66 0.97274
Target:  5'- --aGUGCGgGUUGUcgCGCCGguaugucugcgCGUUGGc -3'
miRNA:   3'- gaaCACGCgCAGUA--GCGGCa----------GCAACC- -5'
6764 5' -53.2 NC_001875.2 + 98880 0.68 0.917513
Target:  5'- -aUGUGCGCGgg--CGCCGUUucgGGa -3'
miRNA:   3'- gaACACGCGCaguaGCGGCAGcaaCC- -5'
6764 5' -53.2 NC_001875.2 + 96205 0.67 0.943508
Target:  5'- aCUUGcgcUGCGCcagauaGUCcgCGUCGgCGUUGGg -3'
miRNA:   3'- -GAAC---ACGCG------CAGuaGCGGCaGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 95308 0.69 0.885416
Target:  5'- --gGUGCGCGcCAgCGCCGUU--UGGc -3'
miRNA:   3'- gaaCACGCGCaGUaGCGGCAGcaACC- -5'
6764 5' -53.2 NC_001875.2 + 94336 0.67 0.947973
Target:  5'- ----gGCGCGUCGUCcgcaCCGUCGccGGc -3'
miRNA:   3'- gaacaCGCGCAGUAGc---GGCAGCaaCC- -5'
6764 5' -53.2 NC_001875.2 + 94163 1.1 0.004704
Target:  5'- uCUUGUGCGCGUCAUCGCCGUCGUUGGc -3'
miRNA:   3'- -GAACACGCGCAGUAGCGGCAGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 90994 0.71 0.8224
Target:  5'- --gGUGCGCGUCuuggcgagCGCCGUC-UUGc -3'
miRNA:   3'- gaaCACGCGCAGua------GCGGCAGcAACc -5'
6764 5' -53.2 NC_001875.2 + 78717 0.67 0.952198
Target:  5'- -gUGUGCGUGUCGUCGUCaaacUUGUg-- -3'
miRNA:   3'- gaACACGCGCAGUAGCGGc---AGCAacc -5'
6764 5' -53.2 NC_001875.2 + 76519 0.68 0.905396
Target:  5'- ----gGCGCGUCAUCaCCGUCGc--- -3'
miRNA:   3'- gaacaCGCGCAGUAGcGGCAGCaacc -5'
6764 5' -53.2 NC_001875.2 + 73375 0.66 0.96347
Target:  5'- --gGUGCGCuuguacugguuGUCGUCuUCGUCGUaaaUGGg -3'
miRNA:   3'- gaaCACGCG-----------CAGUAGcGGCAGCA---ACC- -5'
6764 5' -53.2 NC_001875.2 + 73056 0.67 0.943508
Target:  5'- --cGUuCGCGUCGaaaaagcgcaCGUCGUCGUUGGc -3'
miRNA:   3'- gaaCAcGCGCAGUa---------GCGGCAGCAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.