Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6764 | 5' | -53.2 | NC_001875.2 | + | 60488 | 0.72 | 0.748078 |
Target: 5'- aUUGUGCuaGCGUCggCGuuGUCGgcGGu -3' miRNA: 3'- gAACACG--CGCAGuaGCggCAGCaaCC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 54331 | 0.72 | 0.738216 |
Target: 5'- --cGUGCGCGUgA-CGgucaCGUCGUUGGa -3' miRNA: 3'- gaaCACGCGCAgUaGCg---GCAGCAACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 46445 | 0.74 | 0.615148 |
Target: 5'- uUUGUGUGCGaCAUaaaCGCCGUUGUggUGGa -3' miRNA: 3'- gAACACGCGCaGUA---GCGGCAGCA--ACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 99693 | 0.75 | 0.573809 |
Target: 5'- ----aGCGCGUCuUCGCCGcCGUUGa -3' miRNA: 3'- gaacaCGCGCAGuAGCGGCaGCAACc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 60651 | 0.77 | 0.503337 |
Target: 5'- aCUUGUGCcauuuuGUGUCGUCGUCGUCGUc-- -3' miRNA: 3'- -GAACACG------CGCAGUAGCGGCAGCAacc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 18285 | 0.77 | 0.464775 |
Target: 5'- --cGUGCGCGaCcgCGCCGUUGaUUGGg -3' miRNA: 3'- gaaCACGCGCaGuaGCGGCAGC-AACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 99757 | 0.78 | 0.41884 |
Target: 5'- -cUGUGUGCGUUuggCGCCGUUGUUGcGg -3' miRNA: 3'- gaACACGCGCAGua-GCGGCAGCAAC-C- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 94163 | 1.1 | 0.004704 |
Target: 5'- uCUUGUGCGCGUCAUCGCCGUCGUUGGc -3' miRNA: 3'- -GAACACGCGCAGUAGCGGCAGCAACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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