miRNA display CGI


Results 41 - 48 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6764 5' -53.2 NC_001875.2 + 60488 0.72 0.748078
Target:  5'- aUUGUGCuaGCGUCggCGuuGUCGgcGGu -3'
miRNA:   3'- gAACACG--CGCAGuaGCggCAGCaaCC- -5'
6764 5' -53.2 NC_001875.2 + 54331 0.72 0.738216
Target:  5'- --cGUGCGCGUgA-CGgucaCGUCGUUGGa -3'
miRNA:   3'- gaaCACGCGCAgUaGCg---GCAGCAACC- -5'
6764 5' -53.2 NC_001875.2 + 46445 0.74 0.615148
Target:  5'- uUUGUGUGCGaCAUaaaCGCCGUUGUggUGGa -3'
miRNA:   3'- gAACACGCGCaGUA---GCGGCAGCA--ACC- -5'
6764 5' -53.2 NC_001875.2 + 99693 0.75 0.573809
Target:  5'- ----aGCGCGUCuUCGCCGcCGUUGa -3'
miRNA:   3'- gaacaCGCGCAGuAGCGGCaGCAACc -5'
6764 5' -53.2 NC_001875.2 + 60651 0.77 0.503337
Target:  5'- aCUUGUGCcauuuuGUGUCGUCGUCGUCGUc-- -3'
miRNA:   3'- -GAACACG------CGCAGUAGCGGCAGCAacc -5'
6764 5' -53.2 NC_001875.2 + 18285 0.77 0.464775
Target:  5'- --cGUGCGCGaCcgCGCCGUUGaUUGGg -3'
miRNA:   3'- gaaCACGCGCaGuaGCGGCAGC-AACC- -5'
6764 5' -53.2 NC_001875.2 + 99757 0.78 0.41884
Target:  5'- -cUGUGUGCGUUuggCGCCGUUGUUGcGg -3'
miRNA:   3'- gaACACGCGCAGua-GCGGCAGCAAC-C- -5'
6764 5' -53.2 NC_001875.2 + 94163 1.1 0.004704
Target:  5'- uCUUGUGCGCGUCAUCGCCGUCGUUGGc -3'
miRNA:   3'- -GAACACGCGCAGUAGCGGCAGCAACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.