Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6764 | 5' | -53.2 | NC_001875.2 | + | 66771 | 0.68 | 0.933848 |
Target: 5'- cCUUGcccaGCGUGUUggCGCCGcCGUUGu -3' miRNA: 3'- -GAACa---CGCGCAGuaGCGGCaGCAACc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 8070 | 0.68 | 0.917513 |
Target: 5'- uCUUGaGCGCGUCcgCGuuGUUGUc-- -3' miRNA: 3'- -GAACaCGCGCAGuaGCggCAGCAacc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 98880 | 0.68 | 0.917513 |
Target: 5'- -aUGUGCGCGgg--CGCCGUUucgGGa -3' miRNA: 3'- gaACACGCGCaguaGCGGCAGcaaCC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 111124 | 0.68 | 0.911577 |
Target: 5'- ---uUGCGUGUUGUCGCuaaCGUaCGUUGGc -3' miRNA: 3'- gaacACGCGCAGUAGCG---GCA-GCAACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 24342 | 0.68 | 0.907897 |
Target: 5'- --cGUGCcgcgGCGUucagcuccagauaccCGUCGUgGUCGUUGGg -3' miRNA: 3'- gaaCACG----CGCA---------------GUAGCGgCAGCAACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 76519 | 0.68 | 0.905396 |
Target: 5'- ----gGCGCGUCAUCaCCGUCGc--- -3' miRNA: 3'- gaacaCGCGCAGUAGcGGCAGCaacc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 131772 | 0.68 | 0.905396 |
Target: 5'- ----gGCGCGUCAUUGgUGUCGUUc- -3' miRNA: 3'- gaacaCGCGCAGUAGCgGCAGCAAcc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 95308 | 0.69 | 0.885416 |
Target: 5'- --gGUGCGCGcCAgCGCCGUU--UGGc -3' miRNA: 3'- gaaCACGCGCaGUaGCGGCAGcaACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 53911 | 0.7 | 0.86336 |
Target: 5'- aUUGUggGCGCGcCGUUGCgGgcgCGUUGGc -3' miRNA: 3'- gAACA--CGCGCaGUAGCGgCa--GCAACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 63707 | 0.7 | 0.86336 |
Target: 5'- --gGUGCGCGUgAUUGCC-UCGccGGa -3' miRNA: 3'- gaaCACGCGCAgUAGCGGcAGCaaCC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 3014 | 0.7 | 0.842677 |
Target: 5'- --aGUGCGCG---UCGCCGUgcaaguuguacacgcCGUUGGg -3' miRNA: 3'- gaaCACGCGCaguAGCGGCA---------------GCAACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 114580 | 0.7 | 0.839374 |
Target: 5'- aUUGUGCGCGUCGgcaaacgCGgCGUCuuGUUGc -3' miRNA: 3'- gAACACGCGCAGUa------GCgGCAG--CAACc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 8609 | 0.71 | 0.8224 |
Target: 5'- aCUUGUGCGCGcuaauaaacUUGUCGCUGUuggUGUUGa -3' miRNA: 3'- -GAACACGCGC---------AGUAGCGGCA---GCAACc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 90994 | 0.71 | 0.8224 |
Target: 5'- --gGUGCGCGUCuuggcgagCGCCGUC-UUGc -3' miRNA: 3'- gaaCACGCGCAGua------GCGGCAGcAACc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 3228 | 0.71 | 0.813641 |
Target: 5'- --cGUGgGCG-CGUUGgCGUUGUUGGa -3' miRNA: 3'- gaaCACgCGCaGUAGCgGCAGCAACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 58531 | 0.71 | 0.813641 |
Target: 5'- -cUGUGuCGCGUCGUCGCgG-CGUUu- -3' miRNA: 3'- gaACAC-GCGCAGUAGCGgCaGCAAcc -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 27242 | 0.71 | 0.786381 |
Target: 5'- aUUGUGgGCGUCAUC-CUGUUuUUGGu -3' miRNA: 3'- gAACACgCGCAGUAGcGGCAGcAACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 16405 | 0.71 | 0.776996 |
Target: 5'- --gGUGCgGUGuUCGUCGCCGccaaaccguUCGUUGGc -3' miRNA: 3'- gaaCACG-CGC-AGUAGCGGC---------AGCAACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 13806 | 0.72 | 0.767478 |
Target: 5'- -gUG-GCGCGgCGUUGCCGUCGcacUGGu -3' miRNA: 3'- gaACaCGCGCaGUAGCGGCAGCa--ACC- -5' |
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6764 | 5' | -53.2 | NC_001875.2 | + | 60488 | 0.72 | 0.748078 |
Target: 5'- aUUGUGCuaGCGUCggCGuuGUCGgcGGu -3' miRNA: 3'- gAACACG--CGCAGuaGCggCAGCaaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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