Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6765 | 3' | -54.1 | NC_001875.2 | + | 122209 | 0.68 | 0.827644 |
Target: 5'- aCACGCacGGCGCGcGC-ACGCAGCu- -3' miRNA: 3'- -GUGUGaaCCGCGUuCGcUGUGUCGuu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 4875 | 0.68 | 0.827644 |
Target: 5'- gCACGCUgcGGCGCAAacuauuuaacucGCGcCGCAGCu- -3' miRNA: 3'- -GUGUGAa-CCGCGUU------------CGCuGUGUCGuu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 37211 | 0.68 | 0.827644 |
Target: 5'- --aGCcUGGCGC-AGCGGUGCAGCAAg -3' miRNA: 3'- gugUGaACCGCGuUCGCUGUGUCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 35482 | 0.68 | 0.818716 |
Target: 5'- aACACaUUGGcCGUGAGCGGCAugacaacugcCGGCAAc -3' miRNA: 3'- gUGUG-AACC-GCGUUCGCUGU----------GUCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 17561 | 0.68 | 0.818716 |
Target: 5'- aACcgUUGGCGCGAGCGGCuGCcGCAc -3' miRNA: 3'- gUGugAACCGCGUUCGCUG-UGuCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 128177 | 0.68 | 0.809603 |
Target: 5'- --uGgUUGGCGCGcaAGCG-CGCAGCAc -3' miRNA: 3'- gugUgAACCGCGU--UCGCuGUGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 95008 | 0.68 | 0.809603 |
Target: 5'- aUACAUUagUGGCGCGGGCGcgcaacugcCGCGGCGc -3' miRNA: 3'- -GUGUGA--ACCGCGUUCGCu--------GUGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 881 | 0.68 | 0.809603 |
Target: 5'- -cCACUuugGGCGCGAGaaCGGCGCAGUc- -3' miRNA: 3'- guGUGAa--CCGCGUUC--GCUGUGUCGuu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 107834 | 0.68 | 0.800312 |
Target: 5'- cCGCGCccGGUGCGccuuGCGACGCGcGCGAg -3' miRNA: 3'- -GUGUGaaCCGCGUu---CGCUGUGU-CGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 35389 | 0.68 | 0.800312 |
Target: 5'- gGCGCUgcuguccgUGGCGCGcgcgAGCGACGCcgacaAGCGc -3' miRNA: 3'- gUGUGA--------ACCGCGU----UCGCUGUG-----UCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 100873 | 0.68 | 0.800312 |
Target: 5'- aGCGCgaGGCGCAgcgcgcgcgugGGCGcCAUGGCGAg -3' miRNA: 3'- gUGUGaaCCGCGU-----------UCGCuGUGUCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 18435 | 0.68 | 0.800312 |
Target: 5'- gGCGCgaGGCGCGGuccGCGugGCGcGCGAa -3' miRNA: 3'- gUGUGaaCCGCGUU---CGCugUGU-CGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 77338 | 0.68 | 0.799374 |
Target: 5'- aCAUGCgagUGGCGCAcGGCGACAacaagguCAGCc- -3' miRNA: 3'- -GUGUGa--ACCGCGU-UCGCUGU-------GUCGuu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 119433 | 0.69 | 0.790855 |
Target: 5'- --uGCUUGGCGC--GCGGCaaACAGCGg -3' miRNA: 3'- gugUGAACCGCGuuCGCUG--UGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 101734 | 0.69 | 0.781241 |
Target: 5'- aGCACcgucacGGCGUAcAGCGcGCACAGCAAc -3' miRNA: 3'- gUGUGaa----CCGCGU-UCGC-UGUGUCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 95227 | 0.69 | 0.781241 |
Target: 5'- cCGCGaucggUGGUGCAagGGCGACgcGCAGCGg -3' miRNA: 3'- -GUGUga---ACCGCGU--UCGCUG--UGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 50483 | 0.69 | 0.781241 |
Target: 5'- gACGCggccGGCGCGuGCG-CGCGGCAc -3' miRNA: 3'- gUGUGaa--CCGCGUuCGCuGUGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 87379 | 0.69 | 0.781241 |
Target: 5'- gCACgACUUGGCGCAcuGCGcCgACGGCGc -3' miRNA: 3'- -GUG-UGAACCGCGUu-CGCuG-UGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 77419 | 0.69 | 0.77148 |
Target: 5'- aCGCGCUguucGGCGacaaGAGCGGCAUGGaCGAg -3' miRNA: 3'- -GUGUGAa---CCGCg---UUCGCUGUGUC-GUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 20801 | 0.69 | 0.77148 |
Target: 5'- aCGCGCaguGCGCGGGCGucguCGCAGCGc -3' miRNA: 3'- -GUGUGaacCGCGUUCGCu---GUGUCGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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