miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6765 3' -54.1 NC_001875.2 + 24206 0.67 0.884222
Target:  5'- aACugU-GGCGCuGAGCG-CGCAGUAu -3'
miRNA:   3'- gUGugAaCCGCG-UUCGCuGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 124885 0.67 0.884222
Target:  5'- gCGCGCcgUGGCGaugucGCGGCGCAcGCAc -3'
miRNA:   3'- -GUGUGa-ACCGCguu--CGCUGUGU-CGUu -5'
6765 3' -54.1 NC_001875.2 + 98868 0.67 0.876825
Target:  5'- aACACcgUGcGCGUcguaaacacGGGCGACAUGGCGAg -3'
miRNA:   3'- gUGUGa-AC-CGCG---------UUCGCUGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 91745 0.67 0.876825
Target:  5'- aGCGCcagccagUGGCGCGucAGCGcCGCGGCc- -3'
miRNA:   3'- gUGUGa------ACCGCGU--UCGCuGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 110174 0.67 0.872271
Target:  5'- gCGCGCUUGGCcuccgccuugucguuGCAAGaCGACAgcCAGUg- -3'
miRNA:   3'- -GUGUGAACCG---------------CGUUC-GCUGU--GUCGuu -5'
6765 3' -54.1 NC_001875.2 + 48843 0.67 0.869189
Target:  5'- -cCGCUUcaagcccgccGGCGaCGAGCGGCGCcGCGAg -3'
miRNA:   3'- guGUGAA----------CCGC-GUUCGCUGUGuCGUU- -5'
6765 3' -54.1 NC_001875.2 + 61531 0.67 0.869189
Target:  5'- uCGCGCUUGGCGgccauCAuguGgGACACGGUg- -3'
miRNA:   3'- -GUGUGAACCGC-----GUu--CgCUGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 100765 0.67 0.869189
Target:  5'- uGCGC--GGCGCuugcacagguuGAGCGGCACAGUu- -3'
miRNA:   3'- gUGUGaaCCGCG-----------UUCGCUGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 3533 0.67 0.868412
Target:  5'- gCGCAUUUGGCGCAcgucaccGGCGcCGUGGCGc -3'
miRNA:   3'- -GUGUGAACCGCGU-------UCGCuGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 29798 0.67 0.861319
Target:  5'- gACugUgcgGGCGCuGGCGGCGCAugggucaacgGCAc -3'
miRNA:   3'- gUGugAa--CCGCGuUCGCUGUGU----------CGUu -5'
6765 3' -54.1 NC_001875.2 + 5730 0.67 0.861319
Target:  5'- aACAaagUGGuCGUugauGGCGACGCGGCGc -3'
miRNA:   3'- gUGUga-ACC-GCGu---UCGCUGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 59491 0.67 0.861319
Target:  5'- aACAgCUUG-CGgAcGCGACACAGCAAu -3'
miRNA:   3'- gUGU-GAACcGCgUuCGCUGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 57589 0.67 0.861319
Target:  5'- uCGCGCUguccagaagcgUGGUGUAGGgcaGGCACGGCGc -3'
miRNA:   3'- -GUGUGA-----------ACCGCGUUCg--CUGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 98337 0.67 0.853222
Target:  5'- gCACAUgUUGGCGCu-GCGGCACGuCGAc -3'
miRNA:   3'- -GUGUG-AACCGCGuuCGCUGUGUcGUU- -5'
6765 3' -54.1 NC_001875.2 + 17661 0.68 0.844905
Target:  5'- gCGCGCUggcggugaagcUGGCGUuuAGcCGACGCGGCu- -3'
miRNA:   3'- -GUGUGA-----------ACCGCGu-UC-GCUGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 11978 0.68 0.841519
Target:  5'- aGCACUggcgacggcguugGGCGCGGGUGugGUGGCGAg -3'
miRNA:   3'- gUGUGAa------------CCGCGUUCGCugUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 44397 0.68 0.836376
Target:  5'- gGCACgucGGCGCGcGCG-CACuGCAAg -3'
miRNA:   3'- gUGUGaa-CCGCGUuCGCuGUGuCGUU- -5'
6765 3' -54.1 NC_001875.2 + 31974 0.68 0.831161
Target:  5'- aACGCgugUGGCGCgcguacggccgguuuGugagcggcGGCGACGCAGCGc -3'
miRNA:   3'- gUGUGa--ACCGCG---------------U--------UCGCUGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 122209 0.68 0.827644
Target:  5'- aCACGCacGGCGCGcGC-ACGCAGCu- -3'
miRNA:   3'- -GUGUGaaCCGCGUuCGcUGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 4875 0.68 0.827644
Target:  5'- gCACGCUgcGGCGCAAacuauuuaacucGCGcCGCAGCu- -3'
miRNA:   3'- -GUGUGAa-CCGCGUU------------CGCuGUGUCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.