Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6765 | 3' | -54.1 | NC_001875.2 | + | 24206 | 0.67 | 0.884222 |
Target: 5'- aACugU-GGCGCuGAGCG-CGCAGUAu -3' miRNA: 3'- gUGugAaCCGCG-UUCGCuGUGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 24435 | 0.66 | 0.904923 |
Target: 5'- aACGCgcgGGCGuCGAGCGAauCGGCGu -3' miRNA: 3'- gUGUGaa-CCGC-GUUCGCUguGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 28666 | 0.69 | 0.761583 |
Target: 5'- --aACggcGGCGUggGCGACAUGGCGu -3' miRNA: 3'- gugUGaa-CCGCGuuCGCUGUGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 29798 | 0.67 | 0.861319 |
Target: 5'- gACugUgcgGGCGCuGGCGGCGCAugggucaacgGCAc -3' miRNA: 3'- gUGugAa--CCGCGuUCGCUGUGU----------CGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 31974 | 0.68 | 0.831161 |
Target: 5'- aACGCgugUGGCGCgcguacggccgguuuGugagcggcGGCGACGCAGCGc -3' miRNA: 3'- gUGUGa--ACCGCG---------------U--------UCGCUGUGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 34354 | 0.72 | 0.582544 |
Target: 5'- aGCGCgcGGCGCAAGaGACGCAGUu- -3' miRNA: 3'- gUGUGaaCCGCGUUCgCUGUGUCGuu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 35389 | 0.68 | 0.800312 |
Target: 5'- gGCGCUgcuguccgUGGCGCGcgcgAGCGACGCcgacaAGCGc -3' miRNA: 3'- gUGUGA--------ACCGCGU----UCGCUGUG-----UCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 35482 | 0.68 | 0.818716 |
Target: 5'- aACACaUUGGcCGUGAGCGGCAugacaacugcCGGCAAc -3' miRNA: 3'- gUGUG-AACC-GCGUUCGCUGU----------GUCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 36574 | 0.66 | 0.891373 |
Target: 5'- cCACGCgcGGCuguuGCAAaauGCGGCGCAGCc- -3' miRNA: 3'- -GUGUGaaCCG----CGUU---CGCUGUGUCGuu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 37211 | 0.68 | 0.827644 |
Target: 5'- --aGCcUGGCGC-AGCGGUGCAGCAAg -3' miRNA: 3'- gugUGaACCGCGuUCGCUGUGUCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 37583 | 0.73 | 0.55087 |
Target: 5'- uGCGCc-GGCGCGAGCGcCGCGGCc- -3' miRNA: 3'- gUGUGaaCCGCGUUCGCuGUGUCGuu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 41595 | 0.66 | 0.898275 |
Target: 5'- gACGCcgaaGGCGCGGGCGcggGCGCGGgCAu -3' miRNA: 3'- gUGUGaa--CCGCGUUCGC---UGUGUC-GUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 44397 | 0.68 | 0.836376 |
Target: 5'- gGCACgucGGCGCGcGCG-CACuGCAAg -3' miRNA: 3'- gUGUGaa-CCGCGUuCGCuGUGuCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 46374 | 0.66 | 0.898275 |
Target: 5'- cCGCAgCUgcuGCGCAugugcAGCGACACGGUg- -3' miRNA: 3'- -GUGU-GAac-CGCGU-----UCGCUGUGUCGuu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 48843 | 0.67 | 0.869189 |
Target: 5'- -cCGCUUcaagcccgccGGCGaCGAGCGGCGCcGCGAg -3' miRNA: 3'- guGUGAA----------CCGC-GUUCGCUGUGuCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 50483 | 0.69 | 0.781241 |
Target: 5'- gACGCggccGGCGCGuGCG-CGCGGCAc -3' miRNA: 3'- gUGUGaa--CCGCGUuCGCuGUGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 54130 | 0.7 | 0.731177 |
Target: 5'- gUACACUaGcGUGCAAGCGGacgGCGGCAGu -3' miRNA: 3'- -GUGUGAaC-CGCGUUCGCUg--UGUCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 57300 | 0.66 | 0.916844 |
Target: 5'- aACGCgaacgGGCGCGcgucgucGGCGACGCAauuguugcgGCAGc -3' miRNA: 3'- gUGUGaa---CCGCGU-------UCGCUGUGU---------CGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 57589 | 0.67 | 0.861319 |
Target: 5'- uCGCGCUguccagaagcgUGGUGUAGGgcaGGCACGGCGc -3' miRNA: 3'- -GUGUGA-----------ACCGCGUUCg--CUGUGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 59491 | 0.67 | 0.861319 |
Target: 5'- aACAgCUUG-CGgAcGCGACACAGCAAu -3' miRNA: 3'- gUGU-GAACcGCgUuCGCUGUGUCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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