miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6765 3' -54.1 NC_001875.2 + 40 0.71 0.646722
Target:  5'- aCGCAgUUGGUGCucaacucGGCGGCGgCGGCGAa -3'
miRNA:   3'- -GUGUgAACCGCGu------UCGCUGU-GUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 881 0.68 0.809603
Target:  5'- -cCACUuugGGCGCGAGaaCGGCGCAGUc- -3'
miRNA:   3'- guGUGAa--CCGCGUUC--GCUGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 2675 0.68 0.827644
Target:  5'- gGCGCcUGGgGCAAcuGCGGCGCcucGGCAGa -3'
miRNA:   3'- gUGUGaACCgCGUU--CGCUGUG---UCGUU- -5'
6765 3' -54.1 NC_001875.2 + 3098 0.7 0.741421
Target:  5'- gCACGCgccggGGCGCGGcucGCGGCGCAGa-- -3'
miRNA:   3'- -GUGUGaa---CCGCGUU---CGCUGUGUCguu -5'
6765 3' -54.1 NC_001875.2 + 3533 0.67 0.868412
Target:  5'- gCGCAUUUGGCGCAcgucaccGGCGcCGUGGCGc -3'
miRNA:   3'- -GUGUGAACCGCGU-------UCGCuGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 4257 0.7 0.741421
Target:  5'- aCACACUUGGCGUccauccuguaaAAGUGcaGCAGCGc -3'
miRNA:   3'- -GUGUGAACCGCG-----------UUCGCugUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 4875 0.68 0.827644
Target:  5'- gCACGCUgcGGCGCAAacuauuuaacucGCGcCGCAGCu- -3'
miRNA:   3'- -GUGUGAa-CCGCGUU------------CGCuGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 5504 0.66 0.898275
Target:  5'- aGCACgaccGGCGCAcGCG-CGCAGUu- -3'
miRNA:   3'- gUGUGaa--CCGCGUuCGCuGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 5730 0.67 0.861319
Target:  5'- aACAaagUGGuCGUugauGGCGACGCGGCGc -3'
miRNA:   3'- gUGUga-ACC-GCGu---UCGCUGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 10434 0.8 0.226531
Target:  5'- aACAUUUGGCGCAGcagcuuugacGCGGCGCGGCGg -3'
miRNA:   3'- gUGUGAACCGCGUU----------CGCUGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 10673 0.8 0.238364
Target:  5'- uGCACUUGGCGCAGGCGcUGCcGCAAc -3'
miRNA:   3'- gUGUGAACCGCGUUCGCuGUGuCGUU- -5'
6765 3' -54.1 NC_001875.2 + 11978 0.68 0.841519
Target:  5'- aGCACUggcgacggcguugGGCGCGGGUGugGUGGCGAg -3'
miRNA:   3'- gUGUGAa------------CCGCGUUCGCugUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 12674 0.7 0.710419
Target:  5'- gCGCGCcgcgUUGGC-CGGGUGugGCGGCAAa -3'
miRNA:   3'- -GUGUG----AACCGcGUUCGCugUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 13356 0.73 0.546684
Target:  5'- gACACUUGGCGUgcgugcuAGccguuuuccacagcGCGACGCAGCAc -3'
miRNA:   3'- gUGUGAACCGCG-------UU--------------CGCUGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 17561 0.68 0.818716
Target:  5'- aACcgUUGGCGCGAGCGGCuGCcGCAc -3'
miRNA:   3'- gUGugAACCGCGUUCGCUG-UGuCGUu -5'
6765 3' -54.1 NC_001875.2 + 17661 0.68 0.844905
Target:  5'- gCGCGCUggcggugaagcUGGCGUuuAGcCGACGCGGCu- -3'
miRNA:   3'- -GUGUGA-----------ACCGCGu-UC-GCUGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 18435 0.68 0.800312
Target:  5'- gGCGCgaGGCGCGGuccGCGugGCGcGCGAa -3'
miRNA:   3'- gUGUGaaCCGCGUU---CGCugUGU-CGUU- -5'
6765 3' -54.1 NC_001875.2 + 18481 0.66 0.904923
Target:  5'- uGCGCc--GCGCcgcAGCGACGCAGCc- -3'
miRNA:   3'- gUGUGaacCGCGu--UCGCUGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 19480 0.68 0.827644
Target:  5'- gGCGCU-GGUGCuGGCGGCucggGCAGCu- -3'
miRNA:   3'- gUGUGAaCCGCGuUCGCUG----UGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 20801 0.69 0.77148
Target:  5'- aCGCGCaguGCGCGGGCGucguCGCAGCGc -3'
miRNA:   3'- -GUGUGaacCGCGUUCGCu---GUGUCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.