Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6765 | 3' | -54.1 | NC_001875.2 | + | 93490 | 1.06 | 0.004333 |
Target: 5'- aCACACUUGGCGCAAGCGACACAGCAAc -3' miRNA: 3'- -GUGUGAACCGCGUUCGCUGUGUCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 10434 | 0.8 | 0.226531 |
Target: 5'- aACAUUUGGCGCAGcagcuuugacGCGGCGCGGCGg -3' miRNA: 3'- gUGUGAACCGCGUU----------CGCUGUGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 10673 | 0.8 | 0.238364 |
Target: 5'- uGCACUUGGCGCAGGCGcUGCcGCAAc -3' miRNA: 3'- gUGUGAACCGCGUUCGCuGUGuCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 72558 | 0.75 | 0.450136 |
Target: 5'- gGCGCUgcgGGCGCGGGCGcggGCGCuGCGGg -3' miRNA: 3'- gUGUGAa--CCGCGUUCGC---UGUGuCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 77722 | 0.74 | 0.509518 |
Target: 5'- gCACGCUagUGuacacGCGCAauucGGCGGCGCAGCAGc -3' miRNA: 3'- -GUGUGA--AC-----CGCGU----UCGCUGUGUCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 13356 | 0.73 | 0.546684 |
Target: 5'- gACACUUGGCGUgcgugcuAGccguuuuccacagcGCGACGCAGCAc -3' miRNA: 3'- gUGUGAACCGCG-------UU--------------CGCUGUGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 37583 | 0.73 | 0.55087 |
Target: 5'- uGCGCc-GGCGCGAGCGcCGCGGCc- -3' miRNA: 3'- gUGUGaaCCGCGUUCGCuGUGUCGuu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 87584 | 0.73 | 0.55087 |
Target: 5'- aACAgc-GGCGCAAGCGACAguGUAAu -3' miRNA: 3'- gUGUgaaCCGCGUUCGCUGUguCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 100168 | 0.73 | 0.55087 |
Target: 5'- uCACGgUgGGCGCGAGCGGCAUgaaaAGCGc -3' miRNA: 3'- -GUGUgAaCCGCGUUCGCUGUG----UCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 122123 | 0.73 | 0.55087 |
Target: 5'- cCACGCUucgGGCGCGGcGCGGC-CGGCGc -3' miRNA: 3'- -GUGUGAa--CCGCGUU-CGCUGuGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 76867 | 0.73 | 0.571937 |
Target: 5'- gGCGCccaGCGCGAGCGACGCguccGGCAAa -3' miRNA: 3'- gUGUGaacCGCGUUCGCUGUG----UCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 34354 | 0.72 | 0.582544 |
Target: 5'- aGCGCgcGGCGCAAGaGACGCAGUu- -3' miRNA: 3'- gUGUGaaCCGCGUUCgCUGUGUCGuu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 60286 | 0.72 | 0.582544 |
Target: 5'- gCGCACUuguUGGCgacacuGCAGGCGACGCGucGCAGc -3' miRNA: 3'- -GUGUGA---ACCG------CGUUCGCUGUGU--CGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 82091 | 0.72 | 0.593191 |
Target: 5'- aCAUACUgGGcCGCAccAGCGACuACGGCGAc -3' miRNA: 3'- -GUGUGAaCC-GCGU--UCGCUG-UGUCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 68609 | 0.72 | 0.625284 |
Target: 5'- gACGCguuugUGGUGaCGGGCGACGCGGgCGAc -3' miRNA: 3'- gUGUGa----ACCGC-GUUCGCUGUGUC-GUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 40 | 0.71 | 0.646722 |
Target: 5'- aCGCAgUUGGUGCucaacucGGCGGCGgCGGCGAa -3' miRNA: 3'- -GUGUgAACCGCGu------UCGCUGU-GUCGUU- -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 88229 | 0.71 | 0.66811 |
Target: 5'- gGCAaaaacGGCGCAAGCGGCGC-GCGc -3' miRNA: 3'- gUGUgaa--CCGCGUUCGCUGUGuCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 85287 | 0.71 | 0.67876 |
Target: 5'- aCACGgUUuGCGCGGGCGGCGCgGGCGc -3' miRNA: 3'- -GUGUgAAcCGCGUUCGCUGUG-UCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 98336 | 0.7 | 0.693598 |
Target: 5'- cCGCGCUgcguguacaaucgguUGGCGCAccccAGCG-CGCGGCGc -3' miRNA: 3'- -GUGUGA---------------ACCGCGU----UCGCuGUGUCGUu -5' |
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6765 | 3' | -54.1 | NC_001875.2 | + | 66034 | 0.7 | 0.710419 |
Target: 5'- aGCGCUUGGCGCcgcGCaGGCACcGCGc -3' miRNA: 3'- gUGUGAACCGCGuu-CG-CUGUGuCGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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