miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6765 3' -54.1 NC_001875.2 + 125999 0.7 0.710419
Target:  5'- uGCACUgcuacgcgGGCGCGuccagaucGGCGGCGCuGGCAGu -3'
miRNA:   3'- gUGUGAa-------CCGCGU--------UCGCUGUG-UCGUU- -5'
6765 3' -54.1 NC_001875.2 + 70173 0.7 0.710419
Target:  5'- gACAgggUUUGGCGCAgcgagccgGGCGGCgACGGCGAc -3'
miRNA:   3'- gUGU---GAACCGCGU--------UCGCUG-UGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 66034 0.7 0.710419
Target:  5'- aGCGCUUGGCGCcgcGCaGGCACcGCGc -3'
miRNA:   3'- gUGUGAACCGCGuu-CG-CUGUGuCGUu -5'
6765 3' -54.1 NC_001875.2 + 54130 0.7 0.731177
Target:  5'- gUACACUaGcGUGCAAGCGGacgGCGGCAGu -3'
miRNA:   3'- -GUGUGAaC-CGCGUUCGCUg--UGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 3098 0.7 0.741421
Target:  5'- gCACGCgccggGGCGCGGcucGCGGCGCAGa-- -3'
miRNA:   3'- -GUGUGaa---CCGCGUU---CGCUGUGUCguu -5'
6765 3' -54.1 NC_001875.2 + 117334 0.7 0.741421
Target:  5'- gACACggcgcGGCGCGGGCGAacCGGCGGg -3'
miRNA:   3'- gUGUGaa---CCGCGUUCGCUguGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 4257 0.7 0.741421
Target:  5'- aCACACUUGGCGUccauccuguaaAAGUGcaGCAGCGc -3'
miRNA:   3'- -GUGUGAACCGCG-----------UUCGCugUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 88284 0.7 0.741421
Target:  5'- gACGC-UGGCG--GGCGACGCGGUGAu -3'
miRNA:   3'- gUGUGaACCGCguUCGCUGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 99391 0.69 0.761583
Target:  5'- cCGCACcggcGGCGCcAGCGggucGCGCAGCGc -3'
miRNA:   3'- -GUGUGaa--CCGCGuUCGC----UGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 28666 0.69 0.761583
Target:  5'- --aACggcGGCGUggGCGACAUGGCGu -3'
miRNA:   3'- gugUGaa-CCGCGuuCGCUGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 77419 0.69 0.77148
Target:  5'- aCGCGCUguucGGCGacaaGAGCGGCAUGGaCGAg -3'
miRNA:   3'- -GUGUGAa---CCGCg---UUCGCUGUGUC-GUU- -5'
6765 3' -54.1 NC_001875.2 + 20801 0.69 0.77148
Target:  5'- aCGCGCaguGCGCGGGCGucguCGCAGCGc -3'
miRNA:   3'- -GUGUGaacCGCGUUCGCu---GUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 101734 0.69 0.781241
Target:  5'- aGCACcgucacGGCGUAcAGCGcGCACAGCAAc -3'
miRNA:   3'- gUGUGaa----CCGCGU-UCGC-UGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 87379 0.69 0.781241
Target:  5'- gCACgACUUGGCGCAcuGCGcCgACGGCGc -3'
miRNA:   3'- -GUG-UGAACCGCGUu-CGCuG-UGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 50483 0.69 0.781241
Target:  5'- gACGCggccGGCGCGuGCG-CGCGGCAc -3'
miRNA:   3'- gUGUGaa--CCGCGUuCGCuGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 95227 0.69 0.781241
Target:  5'- cCGCGaucggUGGUGCAagGGCGACgcGCAGCGg -3'
miRNA:   3'- -GUGUga---ACCGCGU--UCGCUG--UGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 119433 0.69 0.790855
Target:  5'- --uGCUUGGCGC--GCGGCaaACAGCGg -3'
miRNA:   3'- gugUGAACCGCGuuCGCUG--UGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 77338 0.68 0.799374
Target:  5'- aCAUGCgagUGGCGCAcGGCGACAacaagguCAGCc- -3'
miRNA:   3'- -GUGUGa--ACCGCGU-UCGCUGU-------GUCGuu -5'
6765 3' -54.1 NC_001875.2 + 35389 0.68 0.800312
Target:  5'- gGCGCUgcuguccgUGGCGCGcgcgAGCGACGCcgacaAGCGc -3'
miRNA:   3'- gUGUGA--------ACCGCGU----UCGCUGUG-----UCGUu -5'
6765 3' -54.1 NC_001875.2 + 107834 0.68 0.800312
Target:  5'- cCGCGCccGGUGCGccuuGCGACGCGcGCGAg -3'
miRNA:   3'- -GUGUGaaCCGCGUu---CGCUGUGU-CGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.