miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6765 3' -54.1 NC_001875.2 + 35389 0.68 0.800312
Target:  5'- gGCGCUgcuguccgUGGCGCGcgcgAGCGACGCcgacaAGCGc -3'
miRNA:   3'- gUGUGA--------ACCGCGU----UCGCUGUG-----UCGUu -5'
6765 3' -54.1 NC_001875.2 + 88229 0.71 0.66811
Target:  5'- gGCAaaaacGGCGCAAGCGGCGC-GCGc -3'
miRNA:   3'- gUGUgaa--CCGCGUUCGCUGUGuCGUu -5'
6765 3' -54.1 NC_001875.2 + 85287 0.71 0.67876
Target:  5'- aCACGgUUuGCGCGGGCGGCGCgGGCGc -3'
miRNA:   3'- -GUGUgAAcCGCGUUCGCUGUG-UCGUu -5'
6765 3' -54.1 NC_001875.2 + 70173 0.7 0.710419
Target:  5'- gACAgggUUUGGCGCAgcgagccgGGCGGCgACGGCGAc -3'
miRNA:   3'- gUGU---GAACCGCGU--------UCGCUG-UGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 66034 0.7 0.710419
Target:  5'- aGCGCUUGGCGCcgcGCaGGCACcGCGc -3'
miRNA:   3'- gUGUGAACCGCGuu-CG-CUGUGuCGUu -5'
6765 3' -54.1 NC_001875.2 + 117334 0.7 0.741421
Target:  5'- gACACggcgcGGCGCGGGCGAacCGGCGGg -3'
miRNA:   3'- gUGUGaa---CCGCGUUCGCUguGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 4257 0.7 0.741421
Target:  5'- aCACACUUGGCGUccauccuguaaAAGUGcaGCAGCGc -3'
miRNA:   3'- -GUGUGAACCGCG-----------UUCGCugUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 99391 0.69 0.761583
Target:  5'- cCGCACcggcGGCGCcAGCGggucGCGCAGCGc -3'
miRNA:   3'- -GUGUGaa--CCGCGuUCGC----UGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 77338 0.68 0.799374
Target:  5'- aCAUGCgagUGGCGCAcGGCGACAacaagguCAGCc- -3'
miRNA:   3'- -GUGUGa--ACCGCGU-UCGCUGU-------GUCGuu -5'
6765 3' -54.1 NC_001875.2 + 40 0.71 0.646722
Target:  5'- aCGCAgUUGGUGCucaacucGGCGGCGgCGGCGAa -3'
miRNA:   3'- -GUGUgAACCGCGu------UCGCUGU-GUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 68609 0.72 0.625284
Target:  5'- gACGCguuugUGGUGaCGGGCGACGCGGgCGAc -3'
miRNA:   3'- gUGUGa----ACCGC-GUUCGCUGUGUC-GUU- -5'
6765 3' -54.1 NC_001875.2 + 82091 0.72 0.593191
Target:  5'- aCAUACUgGGcCGCAccAGCGACuACGGCGAc -3'
miRNA:   3'- -GUGUGAaCC-GCGU--UCGCUG-UGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 10673 0.8 0.238364
Target:  5'- uGCACUUGGCGCAGGCGcUGCcGCAAc -3'
miRNA:   3'- gUGUGAACCGCGUUCGCuGUGuCGUU- -5'
6765 3' -54.1 NC_001875.2 + 72558 0.75 0.450136
Target:  5'- gGCGCUgcgGGCGCGGGCGcggGCGCuGCGGg -3'
miRNA:   3'- gUGUGAa--CCGCGUUCGC---UGUGuCGUU- -5'
6765 3' -54.1 NC_001875.2 + 77722 0.74 0.509518
Target:  5'- gCACGCUagUGuacacGCGCAauucGGCGGCGCAGCAGc -3'
miRNA:   3'- -GUGUGA--AC-----CGCGU----UCGCUGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 37583 0.73 0.55087
Target:  5'- uGCGCc-GGCGCGAGCGcCGCGGCc- -3'
miRNA:   3'- gUGUGaaCCGCGUUCGCuGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 87584 0.73 0.55087
Target:  5'- aACAgc-GGCGCAAGCGACAguGUAAu -3'
miRNA:   3'- gUGUgaaCCGCGUUCGCUGUguCGUU- -5'
6765 3' -54.1 NC_001875.2 + 100168 0.73 0.55087
Target:  5'- uCACGgUgGGCGCGAGCGGCAUgaaaAGCGc -3'
miRNA:   3'- -GUGUgAaCCGCGUUCGCUGUG----UCGUu -5'
6765 3' -54.1 NC_001875.2 + 122123 0.73 0.55087
Target:  5'- cCACGCUucgGGCGCGGcGCGGC-CGGCGc -3'
miRNA:   3'- -GUGUGAa--CCGCGUU-CGCUGuGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 34354 0.72 0.582544
Target:  5'- aGCGCgcGGCGCAAGaGACGCAGUu- -3'
miRNA:   3'- gUGUGaaCCGCGUUCgCUGUGUCGuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.