miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6765 3' -54.1 NC_001875.2 + 93490 1.06 0.004333
Target:  5'- aCACACUUGGCGCAAGCGACACAGCAAc -3'
miRNA:   3'- -GUGUGAACCGCGUUCGCUGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 119433 0.69 0.790855
Target:  5'- --uGCUUGGCGC--GCGGCaaACAGCGg -3'
miRNA:   3'- gugUGAACCGCGuuCGCUG--UGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 100873 0.68 0.800312
Target:  5'- aGCGCgaGGCGCAgcgcgcgcgugGGCGcCAUGGCGAg -3'
miRNA:   3'- gUGUGaaCCGCGU-----------UCGCuGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 108028 0.66 0.916844
Target:  5'- gACAC--GGCGCGcccgacgccgcggAGCGACACgucGGCGAc -3'
miRNA:   3'- gUGUGaaCCGCGU-------------UCGCUGUG---UCGUU- -5'
6765 3' -54.1 NC_001875.2 + 98336 0.7 0.693598
Target:  5'- cCGCGCUgcguguacaaucgguUGGCGCAccccAGCG-CGCGGCGc -3'
miRNA:   3'- -GUGUGA---------------ACCGCGU----UCGCuGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 125999 0.7 0.710419
Target:  5'- uGCACUgcuacgcgGGCGCGuccagaucGGCGGCGCuGGCAGu -3'
miRNA:   3'- gUGUGAa-------CCGCGU--------UCGCUGUG-UCGUU- -5'
6765 3' -54.1 NC_001875.2 + 54130 0.7 0.731177
Target:  5'- gUACACUaGcGUGCAAGCGGacgGCGGCAGu -3'
miRNA:   3'- -GUGUGAaC-CGCGUUCGCUg--UGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 3098 0.7 0.741421
Target:  5'- gCACGCgccggGGCGCGGcucGCGGCGCAGa-- -3'
miRNA:   3'- -GUGUGaa---CCGCGUU---CGCUGUGUCguu -5'
6765 3' -54.1 NC_001875.2 + 77419 0.69 0.77148
Target:  5'- aCGCGCUguucGGCGacaaGAGCGGCAUGGaCGAg -3'
miRNA:   3'- -GUGUGAa---CCGCg---UUCGCUGUGUC-GUU- -5'
6765 3' -54.1 NC_001875.2 + 101734 0.69 0.781241
Target:  5'- aGCACcgucacGGCGUAcAGCGcGCACAGCAAc -3'
miRNA:   3'- gUGUGaa----CCGCGU-UCGC-UGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 87379 0.69 0.781241
Target:  5'- gCACgACUUGGCGCAcuGCGcCgACGGCGc -3'
miRNA:   3'- -GUG-UGAACCGCGUu-CGCuG-UGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 28666 0.69 0.761583
Target:  5'- --aACggcGGCGUggGCGACAUGGCGu -3'
miRNA:   3'- gugUGaa-CCGCGuuCGCUGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 13356 0.73 0.546684
Target:  5'- gACACUUGGCGUgcgugcuAGccguuuuccacagcGCGACGCAGCAc -3'
miRNA:   3'- gUGUGAACCGCG-------UU--------------CGCUGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 50483 0.69 0.781241
Target:  5'- gACGCggccGGCGCGuGCG-CGCGGCAc -3'
miRNA:   3'- gUGUGaa--CCGCGUuCGCuGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 76867 0.73 0.571937
Target:  5'- gGCGCccaGCGCGAGCGACGCguccGGCAAa -3'
miRNA:   3'- gUGUGaacCGCGUUCGCUGUG----UCGUU- -5'
6765 3' -54.1 NC_001875.2 + 88284 0.7 0.741421
Target:  5'- gACGC-UGGCG--GGCGACGCGGUGAu -3'
miRNA:   3'- gUGUGaACCGCguUCGCUGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 95227 0.69 0.781241
Target:  5'- cCGCGaucggUGGUGCAagGGCGACgcGCAGCGg -3'
miRNA:   3'- -GUGUga---ACCGCGU--UCGCUG--UGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 18435 0.68 0.800312
Target:  5'- gGCGCgaGGCGCGGuccGCGugGCGcGCGAa -3'
miRNA:   3'- gUGUGaaCCGCGUU---CGCugUGU-CGUU- -5'
6765 3' -54.1 NC_001875.2 + 60286 0.72 0.582544
Target:  5'- gCGCACUuguUGGCgacacuGCAGGCGACGCGucGCAGc -3'
miRNA:   3'- -GUGUGA---ACCG------CGUUCGCUGUGU--CGUU- -5'
6765 3' -54.1 NC_001875.2 + 12674 0.7 0.710419
Target:  5'- gCGCGCcgcgUUGGC-CGGGUGugGCGGCAAa -3'
miRNA:   3'- -GUGUG----AACCGcGUUCGCugUGUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.