miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6765 3' -54.1 NC_001875.2 + 129460 0.66 0.909424
Target:  5'- gGCACUgGGCGCAGcuGuCGgacuccaacaugccGCACAGCAAc -3'
miRNA:   3'- gUGUGAaCCGCGUU--C-GC--------------UGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 128177 0.68 0.809603
Target:  5'- --uGgUUGGCGCGcaAGCG-CGCAGCAc -3'
miRNA:   3'- gugUgAACCGCGU--UCGCuGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 125999 0.7 0.710419
Target:  5'- uGCACUgcuacgcgGGCGCGuccagaucGGCGGCGCuGGCAGu -3'
miRNA:   3'- gUGUGAa-------CCGCGU--------UCGCUGUG-UCGUU- -5'
6765 3' -54.1 NC_001875.2 + 124885 0.67 0.884222
Target:  5'- gCGCGCcgUGGCGaugucGCGGCGCAcGCAc -3'
miRNA:   3'- -GUGUGa-ACCGCguu--CGCUGUGU-CGUu -5'
6765 3' -54.1 NC_001875.2 + 122209 0.68 0.827644
Target:  5'- aCACGCacGGCGCGcGC-ACGCAGCu- -3'
miRNA:   3'- -GUGUGaaCCGCGUuCGcUGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 122123 0.73 0.55087
Target:  5'- cCACGCUucgGGCGCGGcGCGGC-CGGCGc -3'
miRNA:   3'- -GUGUGAa--CCGCGUU-CGCUGuGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 121891 0.66 0.911314
Target:  5'- cCACGCUgucgucgacGCGCAGaucGgGGCACAGCAu -3'
miRNA:   3'- -GUGUGAac-------CGCGUU---CgCUGUGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 120791 0.66 0.908789
Target:  5'- aACGCUgguauccaacaaGCGCAAaCGGCGCAGCAGc -3'
miRNA:   3'- gUGUGAac----------CGCGUUcGCUGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 119433 0.69 0.790855
Target:  5'- --uGCUUGGCGC--GCGGCaaACAGCGg -3'
miRNA:   3'- gugUGAACCGCGuuCGCUG--UGUCGUu -5'
6765 3' -54.1 NC_001875.2 + 117334 0.7 0.741421
Target:  5'- gACACggcgcGGCGCGGGCGAacCGGCGGg -3'
miRNA:   3'- gUGUGaa---CCGCGUUCGCUguGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 110174 0.67 0.872271
Target:  5'- gCGCGCUUGGCcuccgccuugucguuGCAAGaCGACAgcCAGUg- -3'
miRNA:   3'- -GUGUGAACCG---------------CGUUC-GCUGU--GUCGuu -5'
6765 3' -54.1 NC_001875.2 + 109994 0.66 0.911314
Target:  5'- aCGCGCggucggUGGCGUugacGCGcGCGCAGCu- -3'
miRNA:   3'- -GUGUGa-----ACCGCGuu--CGC-UGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 108028 0.66 0.916844
Target:  5'- gACAC--GGCGCGcccgacgccgcggAGCGACACgucGGCGAc -3'
miRNA:   3'- gUGUGaaCCGCGU-------------UCGCUGUG---UCGUU- -5'
6765 3' -54.1 NC_001875.2 + 107834 0.68 0.800312
Target:  5'- cCGCGCccGGUGCGccuuGCGACGCGcGCGAg -3'
miRNA:   3'- -GUGUGaaCCGCGUu---CGCUGUGU-CGUU- -5'
6765 3' -54.1 NC_001875.2 + 101963 0.66 0.891373
Target:  5'- gGCGCcggUGGCGaacGCGACGCAGgCGu -3'
miRNA:   3'- gUGUGa--ACCGCguuCGCUGUGUC-GUu -5'
6765 3' -54.1 NC_001875.2 + 101734 0.69 0.781241
Target:  5'- aGCACcgucacGGCGUAcAGCGcGCACAGCAAc -3'
miRNA:   3'- gUGUGaa----CCGCGU-UCGC-UGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 101078 0.66 0.911314
Target:  5'- ---gUUUGGCGUggGCGGagcuaUACAGCGAc -3'
miRNA:   3'- guguGAACCGCGuuCGCU-----GUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 100873 0.68 0.800312
Target:  5'- aGCGCgaGGCGCAgcgcgcgcgugGGCGcCAUGGCGAg -3'
miRNA:   3'- gUGUGaaCCGCGU-----------UCGCuGUGUCGUU- -5'
6765 3' -54.1 NC_001875.2 + 100765 0.67 0.869189
Target:  5'- uGCGC--GGCGCuugcacagguuGAGCGGCACAGUu- -3'
miRNA:   3'- gUGUGaaCCGCG-----------UUCGCUGUGUCGuu -5'
6765 3' -54.1 NC_001875.2 + 100168 0.73 0.55087
Target:  5'- uCACGgUgGGCGCGAGCGGCAUgaaaAGCGc -3'
miRNA:   3'- -GUGUgAaCCGCGUUCGCUGUG----UCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.