miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6765 5' -57.7 NC_001875.2 + 35905 0.71 0.519997
Target:  5'- cUCUUGgAUG-CGCCGGuCCUUGUCucgaGCa -3'
miRNA:   3'- -AGAACgUACgGCGGCC-GGAACAGc---CG- -5'
6765 5' -57.7 NC_001875.2 + 36401 0.68 0.692363
Target:  5'- gUCUUGCcagccgcGCaCGCUGGCCggcgccgcggUGUCGGg -3'
miRNA:   3'- -AGAACGua-----CG-GCGGCCGGa---------ACAGCCg -5'
6765 5' -57.7 NC_001875.2 + 37595 0.66 0.807384
Target:  5'- ---aGCGccGCgGCCGGCCgcacggCGGCg -3'
miRNA:   3'- agaaCGUa-CGgCGGCCGGaaca--GCCG- -5'
6765 5' -57.7 NC_001875.2 + 38538 0.66 0.798463
Target:  5'- uUUUUGCAgcucGUgGCCGGgUUgcugcGUCGGCg -3'
miRNA:   3'- -AGAACGUa---CGgCGGCCgGAa----CAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 41483 0.77 0.253653
Target:  5'- gUCUUGUGUGgucugCGCCGGCCg-GUCGGCc -3'
miRNA:   3'- -AGAACGUACg----GCGGCCGGaaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 41757 0.7 0.5598
Target:  5'- aCUcGCGaaUGCUGCCGGUCUUGUCc-- -3'
miRNA:   3'- aGAaCGU--ACGGCGGCCGGAACAGccg -5'
6765 5' -57.7 NC_001875.2 + 43428 0.68 0.692363
Target:  5'- --gUGCGUGCCGUccuCGGCCauccacUCGGUg -3'
miRNA:   3'- agaACGUACGGCG---GCCGGaac---AGCCG- -5'
6765 5' -57.7 NC_001875.2 + 49858 0.74 0.358802
Target:  5'- ---cGCcgGCCGgCGcGCCUUGcCGGCg -3'
miRNA:   3'- agaaCGuaCGGCgGC-CGGAACaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 50668 0.71 0.519997
Target:  5'- ---aGCAUG-CGCUGGCC--GUCGGCc -3'
miRNA:   3'- agaaCGUACgGCGGCCGGaaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 51765 0.66 0.807384
Target:  5'- --gUGCAaggUGCCGCCaaaGGCgUUGggcgaGGCg -3'
miRNA:   3'- agaACGU---ACGGCGG---CCGgAACag---CCG- -5'
6765 5' -57.7 NC_001875.2 + 52285 0.7 0.569892
Target:  5'- cUUUUGaaaacaAUGCCGCUGGCCUuugcgcUGU-GGCg -3'
miRNA:   3'- -AGAACg-----UACGGCGGCCGGA------ACAgCCG- -5'
6765 5' -57.7 NC_001875.2 + 53000 0.7 0.600403
Target:  5'- --aUGCAcuuUGCgGCCaGCCU-GUCGGUg -3'
miRNA:   3'- agaACGU---ACGgCGGcCGGAaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 53864 0.68 0.682232
Target:  5'- gCUgGCA--CCGUCGGCCUguugGUCGuGCg -3'
miRNA:   3'- aGAaCGUacGGCGGCCGGAa---CAGC-CG- -5'
6765 5' -57.7 NC_001875.2 + 53977 0.72 0.443248
Target:  5'- -aUUGCAcagguuuuguUGCCGCagcuggucgcgcaCGGCCUUGgCGGCg -3'
miRNA:   3'- agAACGU----------ACGGCG-------------GCCGGAACaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 60479 0.68 0.661853
Target:  5'- ---aGCAaauucauugUGCuagCGUCGGCgUUGUCGGCg -3'
miRNA:   3'- agaaCGU---------ACG---GCGGCCGgAACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 62594 0.71 0.519997
Target:  5'- ---gGCccGUGCCGUCGGgCaaGUCGGCa -3'
miRNA:   3'- agaaCG--UACGGCGGCCgGaaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 64128 0.68 0.70646
Target:  5'- gCUcgGCAacgaacccccucagGCCGCCGGCCaUGUCGuCa -3'
miRNA:   3'- aGAa-CGUa-------------CGGCGGCCGGaACAGCcG- -5'
6765 5' -57.7 NC_001875.2 + 65433 0.67 0.732294
Target:  5'- gUCcgGCGUGCacCGCUGGCg--GUCGGUg -3'
miRNA:   3'- -AGaaCGUACG--GCGGCCGgaaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 66604 0.69 0.631126
Target:  5'- cUCUUGCAUGuuGUCGGgCagcgUGGCg -3'
miRNA:   3'- -AGAACGUACggCGGCCgGaacaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 68692 0.68 0.681216
Target:  5'- --aUGCGUGCCcguggacccgugcGCCGGCCgcgcgccCGGCc -3'
miRNA:   3'- agaACGUACGG-------------CGGCCGGaaca---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.