miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6765 5' -57.7 NC_001875.2 + 432 0.68 0.682232
Target:  5'- gCUUGCAUGuCCGCCaauguGGUCUgcagcgCGGUg -3'
miRNA:   3'- aGAACGUAC-GGCGG-----CCGGAaca---GCCG- -5'
6765 5' -57.7 NC_001875.2 + 438 0.66 0.816145
Target:  5'- cUCgaGCGUGCCGUCGuGCac---CGGCg -3'
miRNA:   3'- -AGaaCGUACGGCGGC-CGgaacaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 1739 0.66 0.807384
Target:  5'- ---cGCGccGCCGCCGccGCCauuuccGUCGGCg -3'
miRNA:   3'- agaaCGUa-CGGCGGC--CGGaa----CAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 1782 0.75 0.332514
Target:  5'- ---aGCAUGCCGCCGccGCCgccgccauuuccGUCGGCg -3'
miRNA:   3'- agaaCGUACGGCGGC--CGGaa----------CAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 1830 0.66 0.807384
Target:  5'- ---aGCAUGCCGCCGccGCCgccaaUGGUa -3'
miRNA:   3'- agaaCGUACGGCGGC--CGGaaca-GCCG- -5'
6765 5' -57.7 NC_001875.2 + 3810 0.67 0.742082
Target:  5'- ---aGCGUcGaCCaCCGGCCgucGUCGGCg -3'
miRNA:   3'- agaaCGUA-C-GGcGGCCGGaa-CAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 7003 0.72 0.481353
Target:  5'- ---gGUGUGCUGCUGGCCgg--CGGCg -3'
miRNA:   3'- agaaCGUACGGCGGCCGGaacaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 7034 0.68 0.692363
Target:  5'- ---aGCGagGUgGCCGcGCgCUUGUCGGCc -3'
miRNA:   3'- agaaCGUa-CGgCGGC-CG-GAACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 7439 0.68 0.702444
Target:  5'- ---gGCAacUGCgCGCCGGCgaUUG-CGGCg -3'
miRNA:   3'- agaaCGU--ACG-GCGGCCGg-AACaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 9032 0.77 0.230258
Target:  5'- cCUUGCGUuuggaGCCGCCGGCCgcGcCGGUu -3'
miRNA:   3'- aGAACGUA-----CGGCGGCCGGaaCaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 10389 0.68 0.672058
Target:  5'- cUUUGaacGCCGCCGcGCCgUGgcgCGGCa -3'
miRNA:   3'- aGAACguaCGGCGGC-CGGaACa--GCCG- -5'
6765 5' -57.7 NC_001875.2 + 10720 0.66 0.824739
Target:  5'- -----gGUGCCGCUGcuaGUCUUGUCGGa -3'
miRNA:   3'- agaacgUACGGCGGC---CGGAACAGCCg -5'
6765 5' -57.7 NC_001875.2 + 11793 0.71 0.500511
Target:  5'- uUCagGUAguUGuuGCCGGCCgcGUCGGUg -3'
miRNA:   3'- -AGaaCGU--ACggCGGCCGGaaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 12673 0.66 0.807384
Target:  5'- ---cGCGcGCCGCguUGGCCgggUGUggCGGCa -3'
miRNA:   3'- agaaCGUaCGGCG--GCCGGa--ACA--GCCG- -5'
6765 5' -57.7 NC_001875.2 + 13525 0.74 0.358802
Target:  5'- --cUGCAgcgcGCgGCCGGCCgccucgacccUGUCGGCg -3'
miRNA:   3'- agaACGUa---CGgCGGCCGGa---------ACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 13643 0.66 0.788476
Target:  5'- -gUUGCcgcGCCGCCGcucaacacaaacaGCCcacuuUUGUCGGCc -3'
miRNA:   3'- agAACGua-CGGCGGC-------------CGG-----AACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 21028 0.66 0.798463
Target:  5'- gUCUcUGCugguccacggGCaCGCCuuCCUUGUCGGCg -3'
miRNA:   3'- -AGA-ACGua--------CG-GCGGccGGAACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 27200 0.69 0.641378
Target:  5'- ---gGCAcG-CGCuaggauCGGCCUUGUCGGCg -3'
miRNA:   3'- agaaCGUaCgGCG------GCCGGAACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 29264 0.66 0.816145
Target:  5'- --gUGCGcgGCCGCCGaCCgcGcCGGCg -3'
miRNA:   3'- agaACGUa-CGGCGGCcGGaaCaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 31704 0.76 0.29236
Target:  5'- gCUUGCGcGCCGCCGGCgcauuaCUU-UCGGCg -3'
miRNA:   3'- aGAACGUaCGGCGGCCG------GAAcAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.