miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6765 5' -57.7 NC_001875.2 + 121738 0.74 0.374932
Target:  5'- uUCUUGUAuUGuuGCgCGGCa-UGUCGGCg -3'
miRNA:   3'- -AGAACGU-ACggCG-GCCGgaACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 119886 0.73 0.40863
Target:  5'- uUC-UGCAacgcGCCGCCGGUCgcgcgcacaGUCGGCg -3'
miRNA:   3'- -AGaACGUa---CGGCGGCCGGaa-------CAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 107405 0.66 0.798463
Target:  5'- --gUGCGUcaacGCCGCCcuGCUUUGUgGGUg -3'
miRNA:   3'- agaACGUA----CGGCGGc-CGGAACAgCCG- -5'
6765 5' -57.7 NC_001875.2 + 104669 0.69 0.651623
Target:  5'- ---gGCGUugaGCuCGCCcuuGGCCaUGUCGGCa -3'
miRNA:   3'- agaaCGUA---CG-GCGG---CCGGaACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 102987 0.66 0.798463
Target:  5'- cUCUaGCggcgacaaGUGcCCGCCGuCCgUGUCGGCc -3'
miRNA:   3'- -AGAaCG--------UAC-GGCGGCcGGaACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 102569 0.7 0.569892
Target:  5'- ---cGCGccCCGCCGGCgcgGUCGGCg -3'
miRNA:   3'- agaaCGUacGGCGGCCGgaaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 101173 0.66 0.816145
Target:  5'- ---cGCGUGgCGCUGGUCaauuacgUGcCGGCg -3'
miRNA:   3'- agaaCGUACgGCGGCCGGa------ACaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 100599 0.68 0.672058
Target:  5'- gCggGCcgGgCGCCGGCCg---CGGCc -3'
miRNA:   3'- aGaaCGuaCgGCGGCCGGaacaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 97451 0.68 0.702444
Target:  5'- aCUUGCAUGaggaaaCCGCU-GCCgUUGUaCGGCa -3'
miRNA:   3'- aGAACGUAC------GGCGGcCGG-AACA-GCCG- -5'
6765 5' -57.7 NC_001875.2 + 94247 0.71 0.539775
Target:  5'- ---cGcCGUGCgGCCGGCCg---CGGCg -3'
miRNA:   3'- agaaC-GUACGgCGGCCGGaacaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 93526 1.12 0.000939
Target:  5'- gUCUUGCAUGCCGCCGGCCUUGUCGGCg -3'
miRNA:   3'- -AGAACGUACGGCGGCCGGAACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 92530 0.7 0.579012
Target:  5'- ---cGCAcGCCGCCGGCacggugugcagcgCgcacuuggUGUCGGCg -3'
miRNA:   3'- agaaCGUaCGGCGGCCG-------------Ga-------ACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 92183 0.7 0.560808
Target:  5'- ---cGCGcGCCGCCGGCCcaaacucgcgcgcggUucgcugcgcgccauUGUCGGCa -3'
miRNA:   3'- agaaCGUaCGGCGGCCGG---------------A--------------ACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 91685 0.66 0.789392
Target:  5'- ---cGCAUcgcGuuGCCGGCCgUG-CGGUg -3'
miRNA:   3'- agaaCGUA---CggCGGCCGGaACaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 91190 0.68 0.661853
Target:  5'- gCUUGCGUGuuGuuGGUCggGUCcGCc -3'
miRNA:   3'- aGAACGUACggCggCCGGaaCAGcCG- -5'
6765 5' -57.7 NC_001875.2 + 89349 0.66 0.798463
Target:  5'- --aUGCAcucGUCGuuGGCUUcGUCGGUa -3'
miRNA:   3'- agaACGUa--CGGCggCCGGAaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 88854 0.69 0.641378
Target:  5'- cCUUcGCAacgGCCGCC-GCCUuucaaagcauUGUUGGCg -3'
miRNA:   3'- aGAA-CGUa--CGGCGGcCGGA----------ACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 85667 0.66 0.824739
Target:  5'- -aUUGUggGCgCGCCGGCCUg--CaGCg -3'
miRNA:   3'- agAACGuaCG-GCGGCCGGAacaGcCG- -5'
6765 5' -57.7 NC_001875.2 + 81973 0.67 0.738178
Target:  5'- aCUUGguUGgCGCCGGCaaggcgcgccgGcCGGCg -3'
miRNA:   3'- aGAACguACgGCGGCCGgaa--------CaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 81130 0.69 0.641378
Target:  5'- ---aGUA-GUCGCCGGCCUgcacgcacaUGUUGGUg -3'
miRNA:   3'- agaaCGUaCGGCGGCCGGA---------ACAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.