miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6765 5' -57.7 NC_001875.2 + 93526 1.12 0.000939
Target:  5'- gUCUUGCAUGCCGCCGGCCUUGUCGGCg -3'
miRNA:   3'- -AGAACGUACGGCGGCCGGAACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 9032 0.77 0.230258
Target:  5'- cCUUGCGUuuggaGCCGCCGGCCgcGcCGGUu -3'
miRNA:   3'- aGAACGUA-----CGGCGGCCGGaaCaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 41483 0.77 0.253653
Target:  5'- gUCUUGUGUGgucugCGCCGGCCg-GUCGGCc -3'
miRNA:   3'- -AGAACGUACg----GCGGCCGGaaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 31704 0.76 0.29236
Target:  5'- gCUUGCGcGCCGCCGGCgcauuaCUU-UCGGCg -3'
miRNA:   3'- aGAACGUaCGGCGGCCG------GAAcAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 1782 0.75 0.332514
Target:  5'- ---aGCAUGCCGCCGccGCCgccgccauuuccGUCGGCg -3'
miRNA:   3'- agaaCGUACGGCGGC--CGGaa----------CAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 49858 0.74 0.358802
Target:  5'- ---cGCcgGCCGgCGcGCCUUGcCGGCg -3'
miRNA:   3'- agaaCGuaCGGCgGC-CGGAACaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 13525 0.74 0.358802
Target:  5'- --cUGCAgcgcGCgGCCGGCCgccucgacccUGUCGGCg -3'
miRNA:   3'- agaACGUa---CGgCGGCCGGa---------ACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 121738 0.74 0.374932
Target:  5'- uUCUUGUAuUGuuGCgCGGCa-UGUCGGCg -3'
miRNA:   3'- -AGAACGU-ACggCG-GCCGgaACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 119886 0.73 0.40863
Target:  5'- uUC-UGCAacgcGCCGCCGGUCgcgcgcacaGUCGGCg -3'
miRNA:   3'- -AGaACGUa---CGGCGGCCGGaa-------CAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 53977 0.72 0.443248
Target:  5'- -aUUGCAcagguuuuguUGCCGCagcuggucgcgcaCGGCCUUGgCGGCg -3'
miRNA:   3'- agAACGU----------ACGGCG-------------GCCGGAACaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 7003 0.72 0.481353
Target:  5'- ---gGUGUGCUGCUGGCCgg--CGGCg -3'
miRNA:   3'- agaaCGUACGGCGGCCGGaacaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 11793 0.71 0.500511
Target:  5'- uUCagGUAguUGuuGCCGGCCgcGUCGGUg -3'
miRNA:   3'- -AGaaCGU--ACggCGGCCGGaaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 50668 0.71 0.519997
Target:  5'- ---aGCAUG-CGCUGGCC--GUCGGCc -3'
miRNA:   3'- agaaCGUACgGCGGCCGGaaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 35905 0.71 0.519997
Target:  5'- cUCUUGgAUG-CGCCGGuCCUUGUCucgaGCa -3'
miRNA:   3'- -AGAACgUACgGCGGCC-GGAACAGc---CG- -5'
6765 5' -57.7 NC_001875.2 + 62594 0.71 0.519997
Target:  5'- ---gGCccGUGCCGUCGGgCaaGUCGGCa -3'
miRNA:   3'- agaaCG--UACGGCGGCCgGaaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 94247 0.71 0.539775
Target:  5'- ---cGcCGUGCgGCCGGCCg---CGGCg -3'
miRNA:   3'- agaaC-GUACGgCGGCCGGaacaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 41757 0.7 0.5598
Target:  5'- aCUcGCGaaUGCUGCCGGUCUUGUCc-- -3'
miRNA:   3'- aGAaCGU--ACGGCGGCCGGAACAGccg -5'
6765 5' -57.7 NC_001875.2 + 92183 0.7 0.560808
Target:  5'- ---cGCGcGCCGCCGGCCcaaacucgcgcgcggUucgcugcgcgccauUGUCGGCa -3'
miRNA:   3'- agaaCGUaCGGCGGCCGG---------------A--------------ACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 102569 0.7 0.569892
Target:  5'- ---cGCGccCCGCCGGCgcgGUCGGCg -3'
miRNA:   3'- agaaCGUacGGCGGCCGgaaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 52285 0.7 0.569892
Target:  5'- cUUUUGaaaacaAUGCCGCUGGCCUuugcgcUGU-GGCg -3'
miRNA:   3'- -AGAACg-----UACGGCGGCCGGA------ACAgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.