miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6765 5' -57.7 NC_001875.2 + 43428 0.68 0.692363
Target:  5'- --gUGCGUGCCGUccuCGGCCauccacUCGGUg -3'
miRNA:   3'- agaACGUACGGCG---GCCGGaac---AGCCG- -5'
6765 5' -57.7 NC_001875.2 + 75970 0.69 0.651623
Target:  5'- ---cGUuUGCCGCCGuaGUCgaGUCGGCg -3'
miRNA:   3'- agaaCGuACGGCGGC--CGGaaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 60479 0.68 0.661853
Target:  5'- ---aGCAaauucauugUGCuagCGUCGGCgUUGUCGGCg -3'
miRNA:   3'- agaaCGU---------ACG---GCGGCCGgAACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 10389 0.68 0.672058
Target:  5'- cUUUGaacGCCGCCGcGCCgUGgcgCGGCa -3'
miRNA:   3'- aGAACguaCGGCGGC-CGGaACa--GCCG- -5'
6765 5' -57.7 NC_001875.2 + 100599 0.68 0.672058
Target:  5'- gCggGCcgGgCGCCGGCCg---CGGCc -3'
miRNA:   3'- aGaaCGuaCgGCGGCCGGaacaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 68692 0.68 0.681216
Target:  5'- --aUGCGUGCCcguggacccgugcGCCGGCCgcgcgccCGGCc -3'
miRNA:   3'- agaACGUACGG-------------CGGCCGGaaca---GCCG- -5'
6765 5' -57.7 NC_001875.2 + 53864 0.68 0.682232
Target:  5'- gCUgGCA--CCGUCGGCCUguugGUCGuGCg -3'
miRNA:   3'- aGAaCGUacGGCGGCCGGAa---CAGC-CG- -5'
6765 5' -57.7 NC_001875.2 + 7034 0.68 0.692363
Target:  5'- ---aGCGagGUgGCCGcGCgCUUGUCGGCc -3'
miRNA:   3'- agaaCGUa-CGgCGGC-CG-GAACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 36401 0.68 0.692363
Target:  5'- gUCUUGCcagccgcGCaCGCUGGCCggcgccgcggUGUCGGg -3'
miRNA:   3'- -AGAACGua-----CG-GCGGCCGGa---------ACAGCCg -5'
6765 5' -57.7 NC_001875.2 + 104669 0.69 0.651623
Target:  5'- ---gGCGUugaGCuCGCCcuuGGCCaUGUCGGCa -3'
miRNA:   3'- agaaCGUA---CG-GCGG---CCGGaACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 27200 0.69 0.641378
Target:  5'- ---gGCAcG-CGCuaggauCGGCCUUGUCGGCg -3'
miRNA:   3'- agaaCGUaCgGCG------GCCGGAACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 81130 0.69 0.641378
Target:  5'- ---aGUA-GUCGCCGGCCUgcacgcacaUGUUGGUg -3'
miRNA:   3'- agaaCGUaCGGCGGCCGGA---------ACAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 1782 0.75 0.332514
Target:  5'- ---aGCAUGCCGCCGccGCCgccgccauuuccGUCGGCg -3'
miRNA:   3'- agaaCGUACGGCGGC--CGGaa----------CAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 49858 0.74 0.358802
Target:  5'- ---cGCcgGCCGgCGcGCCUUGcCGGCg -3'
miRNA:   3'- agaaCGuaCGGCgGC-CGGAACaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 53977 0.72 0.443248
Target:  5'- -aUUGCAcagguuuuguUGCCGCagcuggucgcgcaCGGCCUUGgCGGCg -3'
miRNA:   3'- agAACGU----------ACGGCG-------------GCCGGAACaGCCG- -5'
6765 5' -57.7 NC_001875.2 + 50668 0.71 0.519997
Target:  5'- ---aGCAUG-CGCUGGCC--GUCGGCc -3'
miRNA:   3'- agaaCGUACgGCGGCCGGaaCAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 41757 0.7 0.5598
Target:  5'- aCUcGCGaaUGCUGCCGGUCUUGUCc-- -3'
miRNA:   3'- aGAaCGU--ACGGCGGCCGGAACAGccg -5'
6765 5' -57.7 NC_001875.2 + 52285 0.7 0.569892
Target:  5'- cUUUUGaaaacaAUGCCGCUGGCCUuugcgcUGU-GGCg -3'
miRNA:   3'- -AGAACg-----UACGGCGGCCGGA------ACAgCCG- -5'
6765 5' -57.7 NC_001875.2 + 75998 0.69 0.620874
Target:  5'- cUCaaGCGUGuCCGCCaaucuGGCCcguuucGUCGGCg -3'
miRNA:   3'- -AGaaCGUAC-GGCGG-----CCGGaa----CAGCCG- -5'
6765 5' -57.7 NC_001875.2 + 66604 0.69 0.631126
Target:  5'- cUCUUGCAUGuuGUCGGgCagcgUGGCg -3'
miRNA:   3'- -AGAACGUACggCGGCCgGaacaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.