miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6766 3' -56.4 NC_001875.2 + 92585 1.08 0.002484
Target:  5'- cCCCGCGUCGCGCAGUUUCUCCAGCAUg -3'
miRNA:   3'- -GGGCGCAGCGCGUCAAAGAGGUCGUA- -5'
6766 3' -56.4 NC_001875.2 + 124455 0.75 0.38777
Target:  5'- aCCGCGUCGCGCAaccgcGUggccgaUCCGGCGg -3'
miRNA:   3'- gGGCGCAGCGCGU-----CAaag---AGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 50843 0.73 0.468412
Target:  5'- -aCGCGUCGCGCGccUUUUUCAGCAg -3'
miRNA:   3'- ggGCGCAGCGCGUcaAAGAGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 104370 0.72 0.516759
Target:  5'- gCCUaaaGCGUCGCGCAccccaCUCCAGCGa -3'
miRNA:   3'- -GGG---CGCAGCGCGUcaaa-GAGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 89153 0.72 0.516759
Target:  5'- aCCgCGCGcCGCGCGGUUUCgugcacgCUGGCGc -3'
miRNA:   3'- -GG-GCGCaGCGCGUCAAAGa------GGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 5510 0.7 0.6287
Target:  5'- aCCgGCGcacgCGCGCAGUUUacgCCGGCc- -3'
miRNA:   3'- -GGgCGCa---GCGCGUCAAAga-GGUCGua -5'
6766 3' -56.4 NC_001875.2 + 108508 0.7 0.649376
Target:  5'- aCCCGcCGUCGUGCuccUUUCcgcCCAGCAa -3'
miRNA:   3'- -GGGC-GCAGCGCGuc-AAAGa--GGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 93105 0.7 0.669995
Target:  5'- aCCCGC-UUGUGguGcg-CUCCAGCAa -3'
miRNA:   3'- -GGGCGcAGCGCguCaaaGAGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 84644 0.7 0.669995
Target:  5'- aCCCGCG-CGUGUg----CUCCAGCAg -3'
miRNA:   3'- -GGGCGCaGCGCGucaaaGAGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 110158 0.69 0.690488
Target:  5'- aCCGCGUCGCGCucg-UCgggCGGCGUc -3'
miRNA:   3'- gGGCGCAGCGCGucaaAGag-GUCGUA- -5'
6766 3' -56.4 NC_001875.2 + 23812 0.69 0.710783
Target:  5'- cUCCGCGgcgucgggCGCGCcGUgUCUCUGGCGg -3'
miRNA:   3'- -GGGCGCa-------GCGCGuCAaAGAGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 42696 0.69 0.720833
Target:  5'- aCCGCGcggCGCGCGGUUUCguacGCAa -3'
miRNA:   3'- gGGCGCa--GCGCGUCAAAGagguCGUa -5'
6766 3' -56.4 NC_001875.2 + 11346 0.68 0.730805
Target:  5'- --aGUGUCuGCGCGGUUgcgaaacacCUCCAGCAg -3'
miRNA:   3'- gggCGCAG-CGCGUCAAa--------GAGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 58038 0.68 0.76016
Target:  5'- aCCGCucGUCGCGCAGguuggUUUUguGCAc -3'
miRNA:   3'- gGGCG--CAGCGCGUCaa---AGAGguCGUa -5'
6766 3' -56.4 NC_001875.2 + 6613 0.68 0.769727
Target:  5'- aCCGCGcCGCacGCGGUguacUCgugCCAGCGa -3'
miRNA:   3'- gGGCGCaGCG--CGUCAa---AGa--GGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 102553 0.68 0.769727
Target:  5'- gUCCGCGUCGUGCAugaaauagaacGggUCggaCAGCGUc -3'
miRNA:   3'- -GGGCGCAGCGCGU-----------CaaAGag-GUCGUA- -5'
6766 3' -56.4 NC_001875.2 + 21189 0.68 0.779168
Target:  5'- aUCGuCGUCGCGCGGcacggCCAGCGc -3'
miRNA:   3'- gGGC-GCAGCGCGUCaaagaGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 66470 0.67 0.788474
Target:  5'- aCCaCGCG-CGCGCGGUUUUUUUcguugAGCAc -3'
miRNA:   3'- -GG-GCGCaGCGCGUCAAAGAGG-----UCGUa -5'
6766 3' -56.4 NC_001875.2 + 118465 0.67 0.795817
Target:  5'- gCUGCGUCGCGCuGUggaaaacggCUAGCAc -3'
miRNA:   3'- gGGCGCAGCGCGuCAaaga-----GGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 55924 0.67 0.806648
Target:  5'- aCCCGCGUaaUGUGGUUgg-CCAGCAg -3'
miRNA:   3'- -GGGCGCAgcGCGUCAAagaGGUCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.