miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6766 3' -56.4 NC_001875.2 + 50843 0.73 0.468412
Target:  5'- -aCGCGUCGCGCGccUUUUUCAGCAg -3'
miRNA:   3'- ggGCGCAGCGCGUcaAAGAGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 124775 0.67 0.814619
Target:  5'- gCCCGUGUuguugagCGCGCGGauuaugUCUugcaCCAGCGUg -3'
miRNA:   3'- -GGGCGCA-------GCGCGUCaa----AGA----GGUCGUA- -5'
6766 3' -56.4 NC_001875.2 + 5850 0.67 0.824175
Target:  5'- gCCCGCGUa--GCAGUgca-CCAGCAc -3'
miRNA:   3'- -GGGCGCAgcgCGUCAaagaGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 42659 0.67 0.832676
Target:  5'- gUCCGCGUCGagGCuGaUUUgcgCCAGCGUg -3'
miRNA:   3'- -GGGCGCAGCg-CGuCaAAGa--GGUCGUA- -5'
6766 3' -56.4 NC_001875.2 + 79627 0.66 0.840167
Target:  5'- uCgCGCGUccaguuugcacggCGCGCAGUcgC-CCAGCAa -3'
miRNA:   3'- -GgGCGCA-------------GCGCGUCAaaGaGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 29876 0.66 0.84099
Target:  5'- gCCUGCGUCGCGU----UCgccaCCGGCGc -3'
miRNA:   3'- -GGGCGCAGCGCGucaaAGa---GGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 37145 0.66 0.849111
Target:  5'- uUCCGCGU-GCGCAucgccgggUUCCAGCAc -3'
miRNA:   3'- -GGGCGCAgCGCGUcaaa----GAGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 12919 0.66 0.872241
Target:  5'- gCCCGUGgauGUGCAGcgUUCUUCuGCAa -3'
miRNA:   3'- -GGGCGCag-CGCGUCa-AAGAGGuCGUa -5'
6766 3' -56.4 NC_001875.2 + 87984 0.66 0.872241
Target:  5'- gCCCGCGUacgcgacgccCGCGCAGcagCcaagCCAGCc- -3'
miRNA:   3'- -GGGCGCA----------GCGCGUCaaaGa---GGUCGua -5'
6766 3' -56.4 NC_001875.2 + 55924 0.67 0.806648
Target:  5'- aCCCGCGUaaUGUGGUUgg-CCAGCAg -3'
miRNA:   3'- -GGGCGCAgcGCGUCAAagaGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 118465 0.67 0.795817
Target:  5'- gCUGCGUCGCGCuGUggaaaacggCUAGCAc -3'
miRNA:   3'- gGGCGCAGCGCGuCAaaga-----GGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 108508 0.7 0.649376
Target:  5'- aCCCGcCGUCGUGCuccUUUCcgcCCAGCAa -3'
miRNA:   3'- -GGGC-GCAGCGCGuc-AAAGa--GGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 93105 0.7 0.669995
Target:  5'- aCCCGC-UUGUGguGcg-CUCCAGCAa -3'
miRNA:   3'- -GGGCGcAGCGCguCaaaGAGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 110158 0.69 0.690488
Target:  5'- aCCGCGUCGCGCucg-UCgggCGGCGUc -3'
miRNA:   3'- gGGCGCAGCGCGucaaAGag-GUCGUA- -5'
6766 3' -56.4 NC_001875.2 + 23812 0.69 0.710783
Target:  5'- cUCCGCGgcgucgggCGCGCcGUgUCUCUGGCGg -3'
miRNA:   3'- -GGGCGCa-------GCGCGuCAaAGAGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 42696 0.69 0.720833
Target:  5'- aCCGCGcggCGCGCGGUUUCguacGCAa -3'
miRNA:   3'- gGGCGCa--GCGCGUCAAAGagguCGUa -5'
6766 3' -56.4 NC_001875.2 + 102553 0.68 0.769727
Target:  5'- gUCCGCGUCGUGCAugaaauagaacGggUCggaCAGCGUc -3'
miRNA:   3'- -GGGCGCAGCGCGU-----------CaaAGag-GUCGUA- -5'
6766 3' -56.4 NC_001875.2 + 6613 0.68 0.769727
Target:  5'- aCCGCGcCGCacGCGGUguacUCgugCCAGCGa -3'
miRNA:   3'- gGGCGCaGCG--CGUCAa---AGa--GGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 66470 0.67 0.788474
Target:  5'- aCCaCGCG-CGCGCGGUUUUUUUcguugAGCAc -3'
miRNA:   3'- -GG-GCGCaGCGCGUCAAAGAGG-----UCGUa -5'
6766 3' -56.4 NC_001875.2 + 72703 0.66 0.875179
Target:  5'- cUCCGCGgugCGCGCcGUUaauugcgcuugcgcgUCggCCAGCGa -3'
miRNA:   3'- -GGGCGCa--GCGCGuCAA---------------AGa-GGUCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.