miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6766 3' -56.4 NC_001875.2 + 21189 0.68 0.779168
Target:  5'- aUCGuCGUCGCGCGGcacggCCAGCGc -3'
miRNA:   3'- gGGC-GCAGCGCGUCaaagaGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 33967 0.67 0.806648
Target:  5'- gCCCGUGcggCGCGCAGccga-CCGGCAc -3'
miRNA:   3'- -GGGCGCa--GCGCGUCaaagaGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 33049 0.66 0.857031
Target:  5'- gCCGCGcCGCGCGGauagcgUUCCGcGCGg -3'
miRNA:   3'- gGGCGCaGCGCGUCaaa---GAGGU-CGUa -5'
6766 3' -56.4 NC_001875.2 + 2303 0.66 0.864743
Target:  5'- gCCGUGgccgCGCGCAGc-UCggCCAGCu- -3'
miRNA:   3'- gGGCGCa---GCGCGUCaaAGa-GGUCGua -5'
6766 3' -56.4 NC_001875.2 + 11346 0.68 0.730805
Target:  5'- --aGUGUCuGCGCGGUUgcgaaacacCUCCAGCAg -3'
miRNA:   3'- gggCGCAG-CGCGUCAAa--------GAGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 84644 0.7 0.669995
Target:  5'- aCCCGCG-CGUGUg----CUCCAGCAg -3'
miRNA:   3'- -GGGCGCaGCGCGucaaaGAGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 5510 0.7 0.6287
Target:  5'- aCCgGCGcacgCGCGCAGUUUacgCCGGCc- -3'
miRNA:   3'- -GGgCGCa---GCGCGUCAAAga-GGUCGua -5'
6766 3' -56.4 NC_001875.2 + 104370 0.72 0.516759
Target:  5'- gCCUaaaGCGUCGCGCAccccaCUCCAGCGa -3'
miRNA:   3'- -GGG---CGCAGCGCGUcaaa-GAGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 89153 0.72 0.516759
Target:  5'- aCCgCGCGcCGCGCGGUUUCgugcacgCUGGCGc -3'
miRNA:   3'- -GG-GCGCaGCGCGUCAAAGa------GGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 124455 0.75 0.38777
Target:  5'- aCCGCGUCGCGCAaccgcGUggccgaUCCGGCGg -3'
miRNA:   3'- gGGCGCAGCGCGU-----CAaag---AGGUCGUa -5'
6766 3' -56.4 NC_001875.2 + 92585 1.08 0.002484
Target:  5'- cCCCGCGUCGCGCAGUUUCUCCAGCAUg -3'
miRNA:   3'- -GGGCGCAGCGCGUCAAAGAGGUCGUA- -5'
6766 3' -56.4 NC_001875.2 + 72703 0.66 0.875179
Target:  5'- cUCCGCGgugCGCGCcGUUaauugcgcuugcgcgUCggCCAGCGa -3'
miRNA:   3'- -GGGCGCa--GCGCGuCAA---------------AGa-GGUCGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.